counts_to_tpm: Convert counts to transcripts per million (TPM).
In ssarda/genomeutils: Utilities for Genome Analysis
Description
Usage
Arguments
Value
Description
Convert a numeric matrix of features (rows) and conditions (columns) with
raw feature counts to transcripts per million.
Usage
1
counts_to_tpm(counts, featureLength, meanFragmentLength)
Arguments
counts
A numeric matrix of raw feature counts i.e.
fragments assigned to each gene.
featureLength
A numeric vector with feature lengths.
meanFragmentLength
A numeric vector with mean fragment lengths.
Value
tpm A numeric matrix normalized by library size and feature length.
ssarda/genomeutils documentation built on May 30, 2019, 8:42 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Convert a numeric matrix of features (rows) and conditions (columns) with raw feature counts to transcripts per million.
Usage
1 | counts_to_tpm(counts, featureLength, meanFragmentLength)
|
Arguments
counts |
A numeric matrix of raw feature counts i.e. fragments assigned to each gene. |
featureLength |
A numeric vector with feature lengths. |
meanFragmentLength |
A numeric vector with mean fragment lengths. |
Value
tpm A numeric matrix normalized by library size and feature length.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.