fetch_gene_length: Fetch gene lengths from gene IDs
In ssarda/genomeutils: Utilities for Genome Analysis
Description
Usage
Arguments
Value
Description
Using the Ensembl hg19 assembly, the function established a SQL connection with the Ensembl DB, and retrieves all the transcripts associated with each gene.
A longest transcript is determined by merging all the exons of individual transcripts.
The concatenated length is computed and returned per gene ID
Usage
1
fetch_gene_length(select_genes)
Arguments
select_genes
A character vector with a given set of interesting genes
Value
A vector of gene lengths
ssarda/genomeutils documentation built on May 30, 2019, 8:42 a.m.
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Description Usage Arguments Value
Description
Using the Ensembl hg19 assembly, the function established a SQL connection with the Ensembl DB, and retrieves all the transcripts associated with each gene. A longest transcript is determined by merging all the exons of individual transcripts. The concatenated length is computed and returned per gene ID
Usage
1 | fetch_gene_length(select_genes)
|
Arguments
select_genes |
A character vector with a given set of interesting genes |
Value
A vector of gene lengths
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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