| .enrichedGeneSets |
Source code
|
| .filterProteinCoding |
Source code
|
| .filterSeqnames |
Source code
|
| .headtail |
Source code
|
| .matchGenesToIds |
Source code
|
| .resultsForAllContrasts |
Source code
|
| .unlistGenes |
Source code
|
| AcidGSEATestsURL |
Man page
|
| FGSEAList |
Man page
|
| FGSEAList,DESeqAnalysis-method |
Man page
|
| FGSEAList,DESeqResults-method |
Man page
|
| FGSEAList,RankedList-method |
Man page
|
| FGSEAList-class |
Man page
|
| Gene2Symbol |
Man page
|
| Gene2Symbol,FGSEAList-method |
Man page
|
| RankedList |
Man page
|
| RankedList,DESeqAnalysis-method |
Man page
|
| RankedList,DESeqResults-method |
Man page
|
| RankedList,FGSEAList-method |
Man page
|
| RankedList-class |
Man page
|
| alphaThreshold |
Man page
|
| alphaThreshold,FGSEAList-method |
Man page
|
| alphaThreshold<- |
Man page
|
| alphaThreshold<-,FGSEAList,numeric-method |
Man page
|
| collectionNames |
Man page
|
| collectionNames,FGSEAList-method |
Man page
|
| collectionNames<- |
Man page
|
| collectionNames<-,FGSEAList,character-method |
Man page
|
| combine |
Man page
|
| combine,FGSEAList,FGSEAList-method |
Man page
|
| contrastNames |
Man page
|
| contrastNames,FGSEAList-method |
Man page
|
| contrastNames<- |
Man page
|
| contrastNames<-,FGSEAList,character-method |
Man page
|
| convertToHuman |
Man page
|
| convertToHuman,DESeqAnalysis-method |
Man page
|
| enrichedGeneSets |
Man page
|
| enrichedGeneSets,FGSEAList-method |
Man page
|
| export |
Man page
|
| export,FGSEAList,character,missingOrNULL-method |
Man page
|
| export,FGSEAList,missingOrNULL,missingOrNULL-method |
Man page
|
| fgsea |
Man page
|
| geneSet |
Man page
|
| geneSet,FGSEAList-method |
Man page
|
| geneSetNames |
Man page
|
| geneSetNames,FGSEAList-method |
Man page
|
| geneSetResults |
Man page
|
| geneSetResults,FGSEAList-method |
Man page
|
| leadingEdge |
Man page
|
| leadingEdge,FGSEAList-method |
Man page
|
| markdownTables |
Man page
|
| markdownTables,FGSEAList-method |
Man page
|
| nesThreshold |
Man page
|
| nesThreshold,FGSEAList-method |
Man page
|
| nesThreshold<- |
Man page
|
| nesThreshold<-,FGSEAList,numeric-method |
Man page
|
| params |
Man page
|
| plotEnrichedGeneSets |
Man page
|
| plotEnrichedGeneSets,FGSEAList-method |
Man page
|
| plotEnrichedUpset |
Man page
|
| plotEnrichedUpset,FGSEAList-method |
Man page
|
| plotGeneSet |
Man page
|
| plotGeneSet,FGSEAList-method |
Man page
|
| plotHeatmap |
Man page
|
| plotHeatmap,FGSEAList-method |
Man page
|
| plotLFC |
Man page
|
| plotLFC,FGSEAList-method |
Man page
|
| plotNES |
Man page
|
| plotNES,FGSEAList-method |
Man page
|
| prepareGeneSetFiles |
Man page
Source code
|
| results |
Man page
|
| results,FGSEAList-method |
Man page
|
| show |
Man page
|
| show,FGSEAList-method |
Man page
|
| updateObject |
Man page
|
| updateObject,FGSEAList-method |
Man page
|
