API for steinbaugh/pfgsea
Acid Genomics GSEA

Global functions
.enrichedGeneSets Source code
.headtail Source code
.matchGenesToIDs Source code
AcidGSEATestsURL Man page
FGSEAList Man page
FGSEAList,DESeqAnalysis-method Man page
FGSEAList-class Man page
Gene2Symbol Man page
Gene2Symbol,FGSEAList-method Man page
Gene2Symbol,RankedList-method Man page
RankedList Man page
RankedList,DESeqAnalysis-method Man page
RankedList,FGSEAList-method Man page
RankedList-class Man page
alphaThreshold Man page
alphaThreshold,FGSEAList-method Man page
alphaThreshold<- Man page
alphaThreshold<-,FGSEAList,numeric-method Man page
collectionNames Man page
collectionNames,FGSEAList-method Man page
collectionNames<- Man page
collectionNames<-,FGSEAList,character-method Man page
combine Man page
combine,FGSEAList,FGSEAList-method Man page
contrastNames Man page
contrastNames,FGSEAList-method Man page
contrastNames<- Man page
contrastNames<-,FGSEAList,character-method Man page
convertToHuman Man page
convertToHuman,DESeqAnalysis-method Man page
defunct Man page
deprecated Man page
enrichedGeneSets Man page
enrichedGeneSets,FGSEAList-method Man page
export Man page
export,FGSEAList-method Man page
fgsea Man page
geneSet Man page
geneSet,FGSEAList-method Man page
geneSetNames Man page
geneSetNames,FGSEAList-method Man page
geneSetResults Man page
geneSetResults,FGSEAList-method Man page
leadingEdge Man page
leadingEdge,FGSEAList-method Man page
nesThreshold Man page
nesThreshold,FGSEAList-method Man page
nesThreshold<- Man page
nesThreshold<-,FGSEAList,numeric-method Man page
params Man page
pfgsea Man page Source code
plotEnrichedGeneSets Man page
plotEnrichedGeneSets,FGSEAList-method Man page
plotEnrichedUpset Man page
plotEnrichedUpset,FGSEAList-method Man page
plotEnrichment Man page Source code
plotGSEATable Man page Source code
plotGeneSet Man page
plotGeneSet,FGSEAList-method Man page
plotHeatmap Man page
plotHeatmap,FGSEAList-method Man page
plotLFC Man page
plotLFC,FGSEAList-method Man page
plotNES Man page
plotNES,FGSEAList-method Man page
results Man page
results,FGSEAList-method Man page
show Man page
show,FGSEAList-method Man page
topTables Man page
topTables,FGSEAList-method Man page
updateObject Man page
updateObject,FGSEAList-method Man page
steinbaugh/pfgsea documentation built on Nov. 17, 2020, 2:24 p.m.