API for steinbaugh/pfgsea
Acid Genomics GSEA

Global functions
.enrichedGeneSets	Source code
.headtail	Source code
.matchGenesToIDs	Source code
AcidGSEATestsURL	Man page
FGSEAList	Man page
FGSEAList,DESeqAnalysis-method	Man page
FGSEAList-class	Man page
Gene2Symbol	Man page
Gene2Symbol,FGSEAList-method	Man page
Gene2Symbol,RankedList-method	Man page
RankedList	Man page
RankedList,DESeqAnalysis-method	Man page
RankedList,FGSEAList-method	Man page
RankedList-class	Man page
alphaThreshold	Man page
alphaThreshold,FGSEAList-method	Man page
alphaThreshold<-	Man page
alphaThreshold<-,FGSEAList,numeric-method	Man page
collectionNames	Man page
collectionNames,FGSEAList-method	Man page
collectionNames<-	Man page
collectionNames<-,FGSEAList,character-method	Man page
combine	Man page
combine,FGSEAList,FGSEAList-method	Man page
contrastNames	Man page
contrastNames,FGSEAList-method	Man page
contrastNames<-	Man page
contrastNames<-,FGSEAList,character-method	Man page
convertToHuman	Man page
convertToHuman,DESeqAnalysis-method	Man page
defunct	Man page
deprecated	Man page
enrichedGeneSets	Man page
enrichedGeneSets,FGSEAList-method	Man page
export	Man page
export,FGSEAList-method	Man page
fgsea	Man page
geneSet	Man page
geneSet,FGSEAList-method	Man page
geneSetNames	Man page
geneSetNames,FGSEAList-method	Man page
geneSetResults	Man page
geneSetResults,FGSEAList-method	Man page
leadingEdge	Man page
leadingEdge,FGSEAList-method	Man page
nesThreshold	Man page
nesThreshold,FGSEAList-method	Man page
nesThreshold<-	Man page
nesThreshold<-,FGSEAList,numeric-method	Man page
params	Man page
pfgsea	Man page Source code
plotEnrichedGeneSets	Man page
plotEnrichedGeneSets,FGSEAList-method	Man page
plotEnrichedUpset	Man page
plotEnrichedUpset,FGSEAList-method	Man page
plotEnrichment	Man page Source code
plotGSEATable	Man page Source code
plotGeneSet	Man page
plotGeneSet,FGSEAList-method	Man page
plotHeatmap	Man page
plotHeatmap,FGSEAList-method	Man page
plotLFC	Man page
plotLFC,FGSEAList-method	Man page
plotNES	Man page
plotNES,FGSEAList-method	Man page
results	Man page
results,FGSEAList-method	Man page
show	Man page
show,FGSEAList-method	Man page
topTables	Man page
topTables,FGSEAList-method	Man page
updateObject	Man page
updateObject,FGSEAList-method	Man page