API for steinbaugh/pfgsea
Parameterized Fast GSEA
| Global functions | |
|---|---|
| .filterResults | Source code |
| .headtail | Source code |
| .leadingEdge | Source code |
| FGSEAList-class | Man page |
| RankedList | Man page |
| RankedList,DESeqAnalysis-method | Man page |
| RankedList,FGSEAList-method | Man page |
| RankedList,matrix-method | Man page |
| RankedList-class | Man page |
| collectionNames | Man page |
| collectionNames,FGSEAList-method | Man page |
| collectionNames<- | Man page |
| collectionNames<-,FGSEAList,character-method | Man page |
| combine | Man page |
| combine,FGSEAList,FGSEAList-method | Man page |
| contrastNames | Man page |
| contrastNames,FGSEAList-method | Man page |
| contrastNames<- | Man page |
| contrastNames<-,FGSEAList,character-method | Man page |
| convertToHuman | Man page |
| convertToHuman,DESeqAnalysis-method | Man page |
| defunct | Man page |
| deprecated | Man page |
| enrichedGeneSets | Man page |
| enrichedGeneSets,FGSEAList-method | Man page |
| export | Man page |
| export,FGSEAList-method | Man page |
| gsea | Man page |
| params | Man page |
| pfgsea | Man page Source code |
| pfgseaTestsURL | Man page |
| plotCounts | Man page |
| plotCounts,FGSEAList-method | Man page |
| plotEnrichedGeneSets | Man page |
| plotEnrichedGeneSets,FGSEAList-method | Man page |
| plotEnrichedUpset | Man page |
| plotEnrichedUpset,FGSEAList-method | Man page |
| plotEnrichment | Man page Source code |
| plotGSEATable | Man page Source code |
| plotHeatmap | Man page |
| plotHeatmap,FGSEAList-method | Man page |
| show | Man page |
| show,FGSEAList-method | Man page |
| topTables | Man page |
| topTables,FGSEAList-method | Man page |
| updateObject | Man page |
| updateObject,FGSEAList-method | Man page |
