API for steinbaugh/pfgsea
Acid Genomics GSEA

Global functions
.enrichedGeneSets Source code
.filterProteinCoding Source code
.filterSeqnames Source code
.headtail Source code
.matchGenesToIds Source code
.resultsForAllContrasts Source code
.unlistGenes Source code
AcidGSEATestsURL Man page
FGSEAList Man page
FGSEAList,DESeqAnalysis-method Man page
FGSEAList,DESeqResults-method Man page
FGSEAList,RankedList-method Man page
FGSEAList-class Man page
Gene2Symbol Man page
Gene2Symbol,FGSEAList-method Man page
RankedList Man page
RankedList,DESeqAnalysis-method Man page
RankedList,DESeqResults-method Man page
RankedList,FGSEAList-method Man page
RankedList-class Man page
alphaThreshold Man page
alphaThreshold,FGSEAList-method Man page
alphaThreshold<- Man page
alphaThreshold<-,FGSEAList,numeric-method Man page
collectionNames Man page
collectionNames,FGSEAList-method Man page
collectionNames<- Man page
collectionNames<-,FGSEAList,character-method Man page
combine Man page
combine,FGSEAList,FGSEAList-method Man page
contrastNames Man page
contrastNames,FGSEAList-method Man page
contrastNames<- Man page
contrastNames<-,FGSEAList,character-method Man page
convertToHuman Man page
convertToHuman,DESeqAnalysis-method Man page
enrichedGeneSets Man page
enrichedGeneSets,FGSEAList-method Man page
export Man page
export,FGSEAList,character,missingOrNULL-method Man page
export,FGSEAList,missingOrNULL,missingOrNULL-method Man page
fgsea Man page
geneSet Man page
geneSet,FGSEAList-method Man page
geneSetNames Man page
geneSetNames,FGSEAList-method Man page
geneSetResults Man page
geneSetResults,FGSEAList-method Man page
leadingEdge Man page
leadingEdge,FGSEAList-method Man page
markdownTables Man page
markdownTables,FGSEAList-method Man page
nesThreshold Man page
nesThreshold,FGSEAList-method Man page
nesThreshold<- Man page
nesThreshold<-,FGSEAList,numeric-method Man page
params Man page
plotEnrichedGeneSets Man page
plotEnrichedGeneSets,FGSEAList-method Man page
plotEnrichedUpset Man page
plotEnrichedUpset,FGSEAList-method Man page
plotGeneSet Man page
plotGeneSet,FGSEAList-method Man page
plotHeatmap Man page
plotHeatmap,FGSEAList-method Man page
plotLFC Man page
plotLFC,FGSEAList-method Man page
plotNES Man page
plotNES,FGSEAList-method Man page
prepareGeneSetFiles Man page Source code
results Man page
results,FGSEAList-method Man page
show Man page
show,FGSEAList-method Man page
updateObject Man page
updateObject,FGSEAList-method Man page
steinbaugh/pfgsea documentation built on June 28, 2022, 8:06 a.m.