Global functions | |
---|---|
.enrichedGeneSets | Source code |
.filterProteinCoding | Source code |
.filterSeqnames | Source code |
.headtail | Source code |
.matchGenesToIds | Source code |
.resultsForAllContrasts | Source code |
.unlistGenes | Source code |
AcidGSEATestsURL | Man page |
FGSEAList | Man page |
FGSEAList,DESeqAnalysis-method | Man page |
FGSEAList,DESeqResults-method | Man page |
FGSEAList,RankedList-method | Man page |
FGSEAList-class | Man page |
Gene2Symbol | Man page |
Gene2Symbol,FGSEAList-method | Man page |
RankedList | Man page |
RankedList,DESeqAnalysis-method | Man page |
RankedList,DESeqResults-method | Man page |
RankedList,FGSEAList-method | Man page |
RankedList-class | Man page |
alphaThreshold | Man page |
alphaThreshold,FGSEAList-method | Man page |
alphaThreshold<- | Man page |
alphaThreshold<-,FGSEAList,numeric-method | Man page |
collectionNames | Man page |
collectionNames,FGSEAList-method | Man page |
collectionNames<- | Man page |
collectionNames<-,FGSEAList,character-method | Man page |
combine | Man page |
combine,FGSEAList,FGSEAList-method | Man page |
contrastNames | Man page |
contrastNames,FGSEAList-method | Man page |
contrastNames<- | Man page |
contrastNames<-,FGSEAList,character-method | Man page |
convertToHuman | Man page |
convertToHuman,DESeqAnalysis-method | Man page |
enrichedGeneSets | Man page |
enrichedGeneSets,FGSEAList-method | Man page |
export | Man page |
export,FGSEAList,character,missingOrNULL-method | Man page |
export,FGSEAList,missingOrNULL,missingOrNULL-method | Man page |
fgsea | Man page |
geneSet | Man page |
geneSet,FGSEAList-method | Man page |
geneSetNames | Man page |
geneSetNames,FGSEAList-method | Man page |
geneSetResults | Man page |
geneSetResults,FGSEAList-method | Man page |
leadingEdge | Man page |
leadingEdge,FGSEAList-method | Man page |
markdownTables | Man page |
markdownTables,FGSEAList-method | Man page |
nesThreshold | Man page |
nesThreshold,FGSEAList-method | Man page |
nesThreshold<- | Man page |
nesThreshold<-,FGSEAList,numeric-method | Man page |
params | Man page |
plotEnrichedGeneSets | Man page |
plotEnrichedGeneSets,FGSEAList-method | Man page |
plotEnrichedUpset | Man page |
plotEnrichedUpset,FGSEAList-method | Man page |
plotGeneSet | Man page |
plotGeneSet,FGSEAList-method | Man page |
plotHeatmap | Man page |
plotHeatmap,FGSEAList-method | Man page |
plotLFC | Man page |
plotLFC,FGSEAList-method | Man page |
plotNES | Man page |
plotNES,FGSEAList-method | Man page |
prepareGeneSetFiles | Man page Source code |
results | Man page |
results,FGSEAList-method | Man page |
show | Man page |
show,FGSEAList-method | Man page |
updateObject | Man page |
updateObject,FGSEAList-method | Man page |
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