convertToHuman: Convert data set by mapping to human orthologs

In steinbaugh/pfgsea: Acid Genomics GSEA

Convert data set by mapping to human orthologs

Description

Convert data set by mapping to human orthologs

Usage

convertToHuman(object, ...)

## S4 method for signature 'DESeqAnalysis'
convertToHuman(object, map = NULL)

Arguments

object	Object.
map	DFrame, or NULL. Ortholog mappings data frame returned by mapHumanOrthologs(). Since this function depends on the BioMart API and has a tendancy to time out, we're allowing passthrough of a cached object here instead. If left NULL, then mapHumanOrthologs() will be called internally.
...	Additional arguments.

Value

Modified object. Features (i.e. rownames) will be remapped to human genes.

Note

Updated 2023-04-28.

Examples

data(deseq, package = "DESeqAnalysis")

## DESeqAnalysis ====
object <- deseq
convertToHuman(object)

steinbaugh/pfgsea documentation built on Oct. 17, 2023, 11:24 a.m.