Man pages for steinbaugh/pfgsea
Parameterized Fast GSEA
| collectionNames | Gene set collection names |
| combine | Combining or merging different Bioconductor data structures |
| contrastNames | Contrast names |
| convertToHuman | Convert data set to use human orthologs |
| defunct | Defunct functions |
| deprecated | Deprecated functions |
| enrichedGeneSets | Enriched pathways |
| export | Export |
| FGSEAList-class | Fast GSEA list |
| gsea | FGSEAList example data |
| params | Parameters |
| pfgsea | Parameterized fast gene set enrichment analysis (GSEA) |
| pfgsea-package | pfgsea |
| pfgseaTestsURL | pfgsea test data URL |
| plotCounts | Plot counts |
| plotEnrichedGeneSets | Plot enriched gene sets |
| plotEnrichedUpset | UpSet plot of directional enriched pathway intersections... |
| plotHeatmap | Heatmap |
| RankedList | Ranked list of genes |
| RankedList-class | Ranked list of genes |
| show | Show an object |
| topTables | Top tables |
| updateObject | Update an object to its current class definition |
