Files in steinbaugh/pfgsea
Acid Genomics GSEA

.Rbuildignore
.gitignore
.lintr
AcidGSEA.Rproj
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/AllClasses.R R/AllGenerics.R R/AllGlobals.R R/DESeqAnalysis-methods.R R/FGSEAList-methods.R R/Gene2Symbol-methods.R R/RankedList-methods.R R/alphaThreshold-methods.R R/collectionNames-methods.R R/combine-methods.R R/contrastNames-methods.R R/convertToHuman-methods.R R/data.R R/deprecated.R R/enrichedGeneSets-methods.R R/export-methods.R R/geneSet-methods.R R/geneSetNames-methods.R R/geneSetResults-methods.R R/imports.R R/internal.R R/leadingEdge-methods.R R/nesThreshold-methods.R R/package.R R/params.R R/plotEnrichedGeneSets-methods.R R/plotEnrichedUpset-methods.R R/plotGeneSet-methods.R R/plotHeatmap-methods.R R/plotLFC-methods.R R/plotNES-methods.R R/results-methods.R R/show-methods.R R/topTables-methods.R R/updateObject-methods.R README.md
_pkgdown.yml
data-raw/external/mm_deseq.R data-raw/fgsea.R
data/fgsea.rda
docs/404.html
docs/CNAME
docs/LICENSE-text.html
docs/articles/acidgsea.html
docs/articles/acidgsea_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/index.html
docs/articles/pfgsea.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/extra.css
docs/index.html
docs/link.svg
docs/news/index.html
docs/news/news-0.0.html
docs/news/news-0.1.html
docs/news/news-0.2.html
docs/news/news-0.3.html
docs/news/news-0.4.html
docs/news/news-0.5.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/FGSEAList-class.html
docs/reference/FGSEAList.html
docs/reference/Gene2Symbol.html
docs/reference/RankedList-class.html
docs/reference/RankedList.html
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/Rplot003.png
docs/reference/Rplot004.png
docs/reference/acidgsea-package.html
docs/reference/acidgseaTestsURL.html
docs/reference/alphaThreshold.html
docs/reference/collectionNames.html
docs/reference/combine.html
docs/reference/contrastNames.html
docs/reference/convertToHuman.html
docs/reference/defunct.html
docs/reference/deprecated.html
docs/reference/enrichedGeneSets.html
docs/reference/export.html
docs/reference/fgsea.html
docs/reference/geneSet.html
docs/reference/geneSetNames.html
docs/reference/geneSetResults.html
docs/reference/index.html
docs/reference/leadingEdge.html
docs/reference/nesThreshold.html
docs/reference/params.html
docs/reference/plotEnrichedGeneSets-1.png
docs/reference/plotEnrichedGeneSets-2.png
docs/reference/plotEnrichedGeneSets-3.png
docs/reference/plotEnrichedGeneSets-4.png
docs/reference/plotEnrichedGeneSets.html
docs/reference/plotEnrichedUpset-1.png
docs/reference/plotEnrichedUpset.html
docs/reference/plotGeneSet-1.png
docs/reference/plotGeneSet.html
docs/reference/plotHeatmap-1.png
docs/reference/plotHeatmap.html
docs/reference/plotLFC-1.png
docs/reference/plotLFC.html
docs/reference/plotNES-1.png
docs/reference/plotNES.html
docs/reference/results.html
docs/reference/show.html
docs/reference/topTables.html
docs/reference/updateObject.html
inst/extdata/msigdb/7.0/msigdb_v7.0_GMTs/h.all.v7.0.symbols.gmt
inst/rmarkdown/templates/fgsea/skeleton/skeleton.Rmd
inst/rmarkdown/templates/fgsea/template.yaml
inst/scripts/render-fgsea.R man/FGSEAList-class.Rd man/FGSEAList.Rd man/Gene2Symbol.Rd man/RankedList-class.Rd man/RankedList.Rd man/acidgsea-package.Rd man/acidgseaTestsURL.Rd man/alphaThreshold.Rd man/collectionNames.Rd man/combine.Rd man/contrastNames.Rd man/convertToHuman.Rd man/defunct.Rd man/deprecated.Rd man/enrichedGeneSets.Rd man/export.Rd man/fgsea.Rd man/geneSet.Rd man/geneSetNames.Rd man/geneSetResults.Rd man/leadingEdge.Rd man/nesThreshold.Rd man/params.Rd man/plotEnrichedGeneSets.Rd man/plotEnrichedUpset.Rd man/plotGeneSet.Rd man/plotHeatmap.Rd man/plotLFC.Rd man/plotNES.Rd man/results.Rd man/show.Rd man/topTables.Rd man/updateObject.Rd msigdb.R
pkgdown/extra.css
tests/testthat-extra/test-convertToHuman.R tests/testthat.R tests/testthat/helper-cache.R tests/testthat/helper-globals.R tests/testthat/test-FGSEAList.R tests/testthat/test-RankedList.R tests/testthat/test-collectionNames.R tests/testthat/test-combine.R tests/testthat/test-enrichedGeneSets.R tests/testthat/test-export.R tests/testthat/test-geneSet.R tests/testthat/test-plotEnrichedGeneSets.R tests/testthat/test-plotEnrichedUpset.R tests/testthat/test-show.R tests/testthat/test-topTables.R vignettes/acidgsea.Rmd
steinbaugh/pfgsea documentation built on Nov. 17, 2020, 2:24 p.m.