updateObject: Update object

In steinbaugh/pfgsea: Acid Genomics GSEA

Update object

Description

Update object

Usage

updateObject(object, ..., verbose = FALSE)

## S4 method for signature 'FgseaList'
updateObject(object, deseq = NULL, alphaThreshold = NULL, ..., verbose = FALSE)

Arguments

object	Object.
deseq	DESeqAnalysis or NULL. Update object by slotting DESeqAnalysis, if necessary. This was added to object in 2020-09.
alphaThreshold	number(1). Alpha level used for GSEA. Note that this is not necessarily the alpha level used to generate DESeqResults object.
...	Additional arguments.
verbose	logical(1). Whether information about the update should be reported.

Value

Modified object.

Note

Updated 2022-04-27.

Author(s)

Michael Steinbaugh

Examples

data(fgsea)

## FgseaList ====
object <- fgsea
object <- updateObject(object)
print(object)

steinbaugh/pfgsea documentation built on Oct. 17, 2023, 11:24 a.m.