Files in steinbaugh/pfgsea

Acid Genomics GSEA

NEWS.md R/AllClasses.R R/AllGenerics.R R/AllGlobals.R R/FgseaList-methods.R R/GeneToSymbol-methods.R R/RankedList-methods.R R/alphaThreshold-methods.R R/collectionNames-methods.R R/combine-methods.R R/contrastNames-methods.R R/convertToHuman-methods.R R/data.R R/enrichedGeneSets-methods.R R/export-methods.R R/geneSet-methods.R R/geneSetNames-methods.R R/geneSetResults-methods.R R/internal.R R/leadingEdge-methods.R R/markdownTables-methods.R R/nesThreshold-methods.R R/package.R R/params.R R/plotEnrichedGeneSets-methods.R R/plotEnrichedUpset-methods.R R/plotGeneSet-methods.R R/plotHeatmap-methods.R R/plotLfc-methods.R R/plotNes-methods.R R/prepareGeneSetFiles.R R/results-methods.R R/show-methods.R R/updateObject-methods.R README.md data-raw/external/mm_deseq.R data-raw/fgsea.R inst/rmarkdown/templates/fgsea/skeleton/skeleton.Rmd inst/scripts/render-fgsea.R longtests/testthat.R longtests/testthat/helper-cache.R longtests/testthat/test-convertToHuman.R man/AcidGSEA-package.Rd man/AcidGseaTestsUrl.Rd man/FgseaList-class.Rd man/FgseaList.Rd man/GeneToSymbol.Rd man/RankedList-class.Rd man/RankedList.Rd man/alphaThreshold.Rd man/collectionNames.Rd man/combine.Rd man/contrastNames.Rd man/convertToHuman.Rd man/enrichedGeneSets.Rd man/export.Rd man/fgsea.Rd man/geneSet.Rd man/geneSetNames.Rd man/geneSetResults.Rd man/leadingEdge.Rd man/markdownTables.Rd man/nesThreshold.Rd man/params.Rd man/plotEnrichedGeneSets.Rd man/plotEnrichedUpset.Rd man/plotGeneSet.Rd man/plotHeatmap.Rd man/plotLfc.Rd man/plotNes.Rd man/prepareGeneSetFiles.Rd man/results.Rd man/show.Rd man/updateObject.Rd tests/testthat.R tests/testthat/helper-cache.R tests/testthat/helper-globals.R tests/testthat/test-FgseaList.R tests/testthat/test-RankedList.R tests/testthat/test-collectionNames.R tests/testthat/test-combine.R tests/testthat/test-enrichedGeneSets.R tests/testthat/test-export.R tests/testthat/test-geneSet.R tests/testthat/test-markdownTables.R tests/testthat/test-plotEnrichedGeneSets.R tests/testthat/test-plotEnrichedUpset.R tests/testthat/test-show.R