In steverozen/PCAWG7: Repository of Data from paper 'The repertoire of Mutational Signatures in Human Cancer'

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
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PCAWG7

Purpose

Contains data from the paper by Alexandrov, Kim, Haradhvala, Huang et al., 'The repertoire of Mutational Signatures in Human Cancer' https://doi.org/10.1038/s41586-020-1943-3. Please see ?PCAWG7. The funny name comes from the fact that this paper was generated by Working Group 7 of the Pan Cancer Analysis of Whole Genomes (PCAWG) consortium. The data were then placed on the COSMIC web site and subsequently updated.

Installation

Latest stable version

if (!requireNamespace("remotes", quietly = TRUE)) {
  install.packages("remotes")
}
remotes::install_github(repo = "steverozen/PCAWG7")

Get the development version

To use new features in the development version, you can install PCAWG7 from the master branch on GitHub, which may not be stable:

if (!requireNamespace("remotes", quietly = TRUE)) {
  install.packages("remotes")
}
remotes::install_github(repo = "steverozen/PCAWG7", ref = "master")

Reference manual

https://github.com/steverozen/PCAWG7/blob/v0.1.3-branch/data-raw/PCAWG7_0.1.3.pdf

steverozen/PCAWG7 documentation built on Feb. 2, 2022, 5:40 a.m.