plotANTsImage: Plotting an image slice or multi-slice with optional color...
In stnava/itkImageR: Examples using Rcpp to interface R and ITK

Description Usage Arguments Value Author(s) Examples

This is a plotting utility for antsImage types with a background and color overlay option. Useful for displaying statistical results overlaid on a background image.

1	plotANTsImage( myantsimage , functional=NA, color="red", axis=1, slices="1x1x1" , threshold="1x0", quality=NA )

`myantsimage`	the reference image on which to overlay
`color = <string>`	the color for the overlay , e.g c("blue","red") length of this list should match the image list
`functional`	list of the images to use as overlays
`axis = <value>`	character ... the axis to slice (1 , 2 or 3)
`slices = <string>`	character, the slices to overlay written as 10x20x3 where 10x20 is the range and 3 is the increment, for multislice display
`threshold = <string>`	character, we overlay values above/below this threshold : of form LOxHI
`quality = <value>`	integer quality magnification factor 1 => large (e.g. 10)
`outname="figx.jpg"`	output name if you want to write the result to a file

output is plot to standard R window

1 – Failure

Avants BB

## Not run: 
# in 2D
  plotANTsImage(myantsimage=img,functional=funcimg,threshold="50x150",color="red",axis=1)
# in 3D
  plotANTsImage(myantsimage=img,functional=img,threshold="50x150",slices="10x20x3",color="red",axis=0)

## End(Not run)