abpBrainExtraction | An ants-based brain extraction script. |
abpN4 | N4 with previously set parameters based on ants brain... |
antsApplyTransforms | A simplified (or full) interface to antsApplyTransforms. |
antsImage-class | Class '"antsImage"' |
antsImageClone | Image Clone |
antsImageRead | Image Read |
antsImageWrite | Image Write |
antsMotionCorr | Motion Correction |
antsRegistration | A simplified (or full) interface to antsRegistration. |
as.antsImage | numeric matrix/array to antsImage |
as.array | antsImage to numeric array |
aslPerfusion | ASL-based Perfusion from PASL, CASL or pCASL. |
as.matrix | antsImage to numeric matrix |
as.numeric | antsImage to numeric vector |
Atropos | FMM Segmentation |
blockStimulus | Block stimulus model for FMRI Data |
cbf | CBF Computation |
Comparison | Relational operators for antsImage |
compcor | Simple compcor function. |
corw | produces a correlation matrix via weighted correlation. |
cvEigenanatomy | Cross-validation method for eigenanatomy decompositions. |
eigSeg | Segmentation for eigenanatomy. |
Extract | Extract/Replace regions an antsImage |
fastwhiten | Simple fastwhitening function. |
filterfMRIforNetworkAnalysis | Basic pre-processing for BOLD or ASL-based network analysis. |
getCentroids | Convert an image to the geometric centroids of its signal |
getfMRInuisanceVariables | Extract generic fMRI nuisance variables for ASL or BOLD |
getMask | Get Mask |
getMultivariateTemplateCoordinates | Label multivariate components by an anatomical coordinate... |
get_perfusion_predictors | Get perfusion predictors |
getROIValues | Compute mean value in each ROI label. |
getTemplateCoordinates | Define an anatomical coordinate system in a new image based... |
hemodynamicRF | Linear Model for FMRI Data |
image2ClusterImages | Converts an image to several independent images. |
imageFileNames2ImageList | Simple imageFileNames2ImageListing function. |
imageListToMatrix | Read Images into a Matrix |
ImageMath | Image Math |
imagesToMatrix | Read Images into a Matrix |
joinEigenanatomy | Simple joinEigenanatomy function. |
KellyKapowski | Compute cortical thickness using the DiReCT algorithm. |
labelClusters | Simple labelClustering function. |
lappend | Simple list append tool |
make3ViewPNG | Rotate an existing 3d window into different views. |
maskImage | Mask input image by mask image. |
matrixToImages | Convert rows of a matrix to images |
MeasureMinMaxMean | Measure Min Max Mean |
mni2tal | Brett's mni2tal |
motion_correction | Motion Correction |
N3BiasFieldCorrection | Bias Field Correction |
networkEiganat | Convenience wrapper for eigenanatomy decomposition. |
pairwiseImageDistanceMatrix | Simple pairwiseImageDistanceMatrix function for images |
partialVolumeCorrection | Perform partial volume correction for ASL images. |
perfusionregression | Perfusion Regression |
phantom_population_study | ANTsR population study using R linear regression. |
plotANTsImage | Plotting an image slice or multi-slice with optional color... |
plotBasicNetwork | Simple plotBasicNetwork function. |
RcppVector | Test |
regressProjections | Regression on image set projection |
renderImageLabels | 3D surface-based rendering of image segmentation labels |
renderNetwork | 3D surface-based rendering of image ROI-based networks |
renderSurfaceFunction | 3D surface-based rendering of volume images. |
simple_roi_analysis | Perform ROI population analysis between two groups. |
simple_voxel_based_analysis | Perform voxel-based population analysis between two groups. |
SmoothImage | Smooth an image |
sparseDecom | Convenience wrapper for eigenanatomy decomposition. |
sparseDecom2 | Convenience wrapper for 2-view eigenanatomy decomposition. |
sparseRegression | Sparse regression on input images. |
splitData | Split data for testing and training |
taskFMRI | Simple taskFMRI function. |
temporalwhiten | Simple autocorrelation-based temporal whitening function. |
ThresholdImage | Theshold Image |
timeseriesimage2matrix | Time-series image to matrix |
visualizeBlob | Visualize cortical blob |
whiten | Simple whitening function. |
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