API for stnava/itkImageR
Examples using Rcpp to interface R and ITK

Global functions
!=,antsImage,ANY-method Man page
"==" Man page
<,antsImage,ANY-method Man page
<=,antsImage,ANY-method Man page
==,antsImage,ANY-method Man page
>,antsImage,ANY-method Man page
>=,antsImage,ANY-method Man page
ANTS Source code
ANTSIntegrateVectorField Source code
ANTSIntegrateVelocityField Source code
ANTSJacobian Source code
Atropos Man page Source code
AtroposMin Source code
AverageAffineTransform Source code
AverageImages Source code
AverageTensorImages Source code
CheckTopology Source code
ClusterImageStatistics Source code
Comparison Man page
ComposeMultiTransform Source code
ComputeSimilarityMetric Source code
ConvertImagePixelType Source code
ConvertScalarImageToRGB Source code
ConvertToJpg Source code
ConvertVectorFieldToVTK Source code
CopyImageHeaderInformation Source code
CreateDTICohort Source code
CreateDisplacementField Source code
CreateImage Source code
CreateWarpedGridImage Source code
Extract Man page
ExtractDenseNetwork Source code
ExtractRegionFromImageByMask Source code
ExtractSliceFromImage Source code
GetMeshAndTopology Source code
ImageCompare Source code
ImageMath Man page Source code
ImageSetStatistics Source code
KellyKapowski Man page Source code
KellySlater Source code
LabelClustersUniquely Source code
LabelGeometryMeasures Source code
LabelImageCentroids Source code
LabelOverlapMeasures Source code
LaplacianThickness Source code
MeasureImageSimilarity Source code
MeasureMinMaxMean Man page Source code
MemoryTest Source code
MotionCorrection Man page
MultiplyImages Source code
N3BiasFieldCorrection Man page Source code
N4BiasFieldCorrection Source code
PasteImageIntoImage Source code
PermuteFlipImageOrientationAxes Source code
PrintHeader Source code
ReorientTensorImage Source code
ResampleImage Source code
ResampleImageBySpacing Source code
ResetDirection Source code
SetDirectionByMatrix Source code
SetOrigin Source code
SetSpacing Source code
SmoothImage Man page Source code
StackSlices Source code
StudentsTestOnImages Source code
SummarizeClusters Source code
SurfaceBasedSmoothing Source code
SurfaceCurvature Source code
TensorDerivedImage Source code
ThresholdImage Man page Source code
TileImages Source code
WarpImageMultiTransform Source code
WarpTensorImageMultiTransform Source code
WarpTimeSeriesImageMultiTransform Source code
WarpVTKPolyDataMultiTransform Source code
[,antsImage,NULL,NULL-method Man page
[,antsImage,NULL,numeric-method Man page
[,antsImage,array,ANY-method Man page
[,antsImage,array,antsRegion-method Man page
[,antsImage,list,ANY-method Man page
[,antsImage,logical,ANY-method Man page
[,antsImage,logical,antsRegion-method Man page
[,antsImage,matrix,ANY-method Man page
[,antsImage,matrix,antsRegion-method Man page
[,antsImage,numeric,NULL-method Man page
[,antsImage,numeric,numeric-method Man page
[<-,antsImage,NULL,NULL,numeric-method Man page
[<-,antsImage,NULL,numeric,numeric-method Man page
[<-,antsImage,array,ANY,ANY-method Man page
[<-,antsImage,array,antsRegion,ANY-method Man page
[<-,antsImage,list,ANY,ANY-method Man page
[<-,antsImage,logical,ANY,ANY-method Man page
[<-,antsImage,logical,antsRegion,ANY-method Man page
[<-,antsImage,matrix,ANY,ANY-method Man page
[<-,antsImage,matrix,antsRegion,ANY-method Man page
[<-,antsImage,numeric,NULL,numeric-method Man page
[<-,antsImage,numeric,numeric,numeric-method Man page
abpBrainExtraction Man page Source code
abpN4 Man page Source code
antsAffineInitializer Source code
antsApplyTransforms Man page Source code
antsAverageImages Source code
antsCopyImageInfo Source code
antsGetDirection Source code
antsGetOrigin Source code
antsGetPixels Source code
antsGetSpacing Source code
antsImage-class Man page
antsImageClone Man page Source code
antsImagePair Source code
antsImageRead Man page Source code
antsImageWrite Man page Source code
antsMotionCorr Man page Source code
antsRegistration Man page Source code
antsSetDirection Source code
antsSetInput,antsBinaryThresholdImageFilter,antsImage-method Man page
antsSetInput,antsPermuteAxesImageFilter,antsImage-method Man page
antsSetInput,antsThresholdImageFilter,antsImage-method Man page
antsSetOrigin Source code
antsSetPixels Source code
antsSetSpacing Source code
antsTransformIndexToPhysicalPoint Source code
antsTransformPhysicalPointToIndex Source code
ants_brain_extraction Source code
ants_compcorr Source code
ants_compcorr_group Source code
ants_motion_estimation Source code
ants_to_template Source code
antsrGetPointerName Source code
antsrParseListToString Source code
antsrParseListToString2 Source code
antsr_frequency_filter Source code
antsr_resting_state_corr_eigenanat Source code
antsrmakeRandomString Source code
as.antsImage Man page
as.array Man page
as.array,antsImage-method Man page
as.data.frame.antsMatrix Source code
as.list.antsMatrix Source code
as.matrix Man page
as.numeric Man page
as.numeric,antsImage-method Man page
aslPerfusion Man page Source code
binarizeSNPs Source code
blockStimulus Man page Source code
casl Man page
cbf Man page
cbf_casl1_ASLtbx Source code
cbf_casl2_ASLtbx Source code
cbf_casl_Chen2011 Source code
cbf_casl_Wang2012 Source code
cbf_pasl_ASLtbx Source code
cbf_pasl_Chen2011 Source code
cbf_pasl_quantify Source code
cbf_pasl_robust Source code
cbf_pcasl_Chen2011 Source code
cbf_robust Source code
clique.community Source code
compcor Man page Source code
compute_cbf Source code
conjGradS Source code
convertRd2rst Source code
corw Man page Source code
cvEigenanatomy Man page Source code
diffmat Source code
eigSeg Man page Source code
fastwhiten Man page Source code
filterPASLforNetworkAnalysis Source code
filterfMRIforNetworkAnalysis Man page Source code
getANTsRData Source code
getCentroids Man page Source code
getMask Man page Source code
getMultivariateTemplateCoordinates Man page Source code
getNetwork Source code
getPckg Source code
getROIValue Man page
getROIValues Source code
getTemplateCoordinates Man page Source code
getValueAtPoint Source code
get_perfusion_predictors Man page Source code
getfMRInuisanceVariables Man page Source code
getvertices Source code
hemodynamicRF Man page Source code
image2ClusterImages Man page Source code
imageFileNames2ImageList Man page Source code
imageListToMatrix Man page Source code
imagesToMatrix Man page Source code
int_antsProcessArguments Source code
itkImageR Source code
joinEigenanatomy Man page Source code
labelClusters Man page Source code
labels2matrix Source code
labels2vector Source code
lappend Man page Source code
largeScaleCommunity Source code
make3ViewPNG Man page Source code
makeDiffGraph Source code
makeGraph Source code
makefacet Source code
makestl Source code
maskImage Man page Source code
matrixToImages Man page Source code
mergeLabels Source code
mni2tal Man page Source code
motion_correction Source code
motioncorrection Man page
networkCorrelation Source code
networkCovariance Source code
networkEiganat Man page Source code
networkOverlap Source code
onLoad Source code
pairwiseImageDistanceMatrix Man page Source code
partialVolumeCorrection Man page Source code
pasl Man page
perfusionregression Man page Source code
phantom_population_study Man page
plotANTsImage Man page Source code
plotBasicNetwork Man page Source code
plotNetwork Source code
quantifyCBF Source code
reduceNetwork Source code
regressProjections Man page Source code
renderImageLabels Man page Source code
renderNetwork Man page Source code
renderSurfaceFunction Man page Source code
simple_roi_analysis Man page Source code
simple_voxel_based_analysis Man page Source code
sliceTimingCorrection Source code
snapColors Source code
sparseDecom Man page Source code
sparseDecom2 Man page Source code
sparseRegression Man page Source code
sparsify Source code
sparsifyv Source code
splitData Man page Source code
taskFMRI Man page Source code
temporalwhiten Man page Source code
timeseries2matrix Source code
timeseriesimage2matrix Man page
visualizeBlob Man page Source code
whiten Man page Source code
whiten2 Source code
stnava/itkImageR documentation built on May 26, 2017, 9:55 p.m.