Files in stnava/itkImageR

Examples using Rcpp to interface R and ITK

ChangeLog

DESCRIPTION

MD5_dont_use

NAMESPACE

R/ANTS.R R/ANTSIntegrateVectorField.R R/ANTSIntegrateVelocityField.R R/ANTSJacobian.R R/Atropos.R R/AtroposMin.R R/AverageAffineTransform.R R/AverageImages.R R/AverageTensorImages.R R/CheckTopology.R R/ClusterImageStatistics.R R/ComposeMultiTransform.R R/ComputeSimilarityMetric.R R/ConvertImagePixelType.R R/ConvertScalarImageToRGB.R R/ConvertToJpg.R R/ConvertVectorFieldToVTK.R R/CopyImageHeaderInformation.R R/CreateDTICohort.R R/CreateDisplacementField.R R/CreateImage.R R/CreateWarpedGridImage.R R/ExtractDenseNetwork.R R/ExtractRegionFromImageByMask.R R/ExtractSliceFromImage.R R/GetMeshAndTopology.R R/ImageCompare.R R/ImageMath.R R/ImageSetStatistics.R R/KellyKapowski.R R/KellySlater.R R/LabelClustersUniquely.R R/LabelGeometryMeasures.R R/LabelImageCentroids.R R/LabelOverlapMeasures.R R/LaplacianThickness.R R/MeasureImageSimilarity.R R/MeasureMinMaxMean.R R/MemoryTest.R R/MultiplyImages.R R/N3BiasFieldCorrection.R R/N4BiasFieldCorrection.R R/NetworkCorrelation.R R/NetworkCovariance.R R/NetworkOverlap.R R/PasteImageIntoImage.R R/PermuteFlipImageOrientationAxes.R R/PrintHeader.R R/ReorientTensorImage.R R/ResampleImage.R R/ResampleImageBySpacing.R R/ResetDirection.R R/SetDirectionByMatrix.R R/SetOrigin.R R/SetSpacing.R R/SmoothImage.R R/StackSlices.R R/StudentsTestOnImages.R R/SummarizeClusters.R R/SurfaceBasedSmoothing.R R/SurfaceCurvature.R R/TensorDerivedImage.R R/ThresholdImage.R R/TileImages.R R/WarpImageMultiTransform.R R/WarpTensorImageMultiTransform.R R/WarpTimeSeriesImageMultiTransform.R R/WarpVTKPolyDataMultiTransform.R R/abpBrainExtraction.R R/abpN4.R R/antsAffineInitializer.R R/antsApplyTransforms.R R/antsAverageImages.R R/antsCopyImageInfo.R R/antsFilters.R R/antsImageClone.R R/antsImagePair.R R/antsImageRead.R R/antsImageWrite.R R/antsImage_class.R R/antsMatrix.R R/antsMotionCorr.R R/antsRegistration.R R/ants_brain_extraction.R R/ants_compcorr.R R/ants_compcorr_group.R R/ants_motion_estimation.R R/ants_to_template.R R/antsr_frequency_filter.R R/antsr_resting_state_corr_eigenanat.R R/aslPerfusion.R R/binarizeSNPs.R R/blockStimulus.R R/cbf_casl1_ASLtbx.R R/cbf_casl2_ASLtbx.R R/cbf_casl_Chen2011.R R/cbf_casl_Wang2012.R R/cbf_pasl_ASLtbx.R R/cbf_pasl_Chen2011.R R/cbf_pasl_quantify.R R/cbf_pasl_robust.R R/cbf_pcasl_Chen2011.R R/cbf_robust.R R/compcor.R R/compute_cbf.R R/conjGradS.R R/convertRd2rst.R R/corw.R R/cvEigenanatomy.R R/eigSeg.R R/fastwhiten.R R/filterPASLforNetworkAnalysis.R R/filterfMRIforNetworkAnalysis.R R/getANTsRData.R R/getCentroids.R R/getMask.R R/getMultivariateTemplateCoordinates.R R/getNetwork.R R/getROIValues.R R/getTemplateCoordinates.R R/get_perfusion_predictors.R R/getfMRInuisanceVariables.R R/hemodynamicRF.R R/image2ClusterImages.R R/imageFileNames2ImageList.R R/imageListToMatrix.R R/imagesToMatrix.R R/int_antsExtractXptrAsString.R R/int_antsProcessArguments.R R/itkImageR.R R/joinEigenanatomy.R R/labelClusters.R R/labels2matrix.R R/labels2vector.R R/lappend.R R/make3ViewPNG.R R/makeDiffGraph.R R/maskImage.R R/matrixToImages.R R/mergeLabels.R R/mni2tal.R R/networkEiganat.R R/onLoad.R R/pairwiseImageDistanceMatrix.R R/partialVolumeCorrection.R R/perfusionregression.R R/plotANTsImage.R R/plotBasicNetwork.R R/plotNetwork.R R/quantifyCBF.R R/reduceNetwork.R R/regressProjections.R R/renderImageLabels.R R/renderNetwork.R R/renderSurfaceFunction.R R/simple_roi_analysis.R R/simple_voxel_based_analysis.R R/sliceTimingCorrection.R R/snapColors.R R/sparseDecom.R R/sparseDecom2.R R/sparseRegression.R R/splitData.R R/taskFMRI.R R/temporalwhiten.R R/timeseries2matrix.R R/visualizeBlob.R R/whiten.R R/whiten2.R README.md

TODO

cleanup

configure

man/Atropos.Rd man/Comparison.Rd man/Extract.Rd man/ImageMath.Rd man/KellyKapowski.Rd man/MeasureMinMaxMean.Rd man/N3BiasFieldCorrection.Rd man/RcppVector.Rd man/SmoothImage.Rd man/ThresholdImage.Rd man/abpBrainExtraction.Rd man/abpN4.Rd man/antsApplyTransforms.Rd man/antsImage-class.Rd man/antsImageClone.Rd man/antsImageRead.Rd man/antsImageWrite.Rd man/antsMotionCorr.Rd man/antsRegistration.Rd man/as.antsImage.Rd man/as.array.Rd man/as.matrix.Rd man/as.numeric.Rd man/aslPerfusion.Rd man/blockStimulus.Rd man/cbf.Rd man/compcor.Rd man/corw.Rd man/cvEigenanatomy.Rd man/eigSeg.Rd man/fastwhiten.Rd man/filterfMRIforNetworkAnalysis.Rd man/getCentroids.Rd man/getMask.Rd man/getMultivariateTemplateCoordinates.Rd man/getROIValues.Rd man/getTemplateCoordinates.Rd man/get_perfusion_predictors.Rd man/getfMRInuisanceVariables.Rd man/hemodynamicRF.Rd man/image2ClusterImages.Rd man/imageFileNames2ImageList.Rd man/imageListToMatrix.Rd man/imagesToMatrix.Rd man/joinEigenanatomy.Rd man/labelClusters.Rd man/lappend.Rd man/make3ViewPNG.Rd man/maskImage.Rd man/matrixToImages.Rd man/mni2tal.Rd man/motion_correction.Rd man/networkEiganat.Rd man/pairwiseImageDistanceMatrix.Rd man/partialVolumeCorrection.Rd man/perfusionregression.Rd man/phantom_population_study.Rd man/plotANTsImage.Rd man/plotBasicNetwork.Rd man/regressProjections.Rd man/renderImageLabels.Rd man/renderNetwork.Rd man/renderSurfaceFunction.Rd man/simple_roi_analysis.Rd man/simple_voxel_based_analysis.Rd man/sparseDecom.Rd man/sparseDecom2.Rd man/sparseRegression.Rd man/splitData.Rd man/taskFMRI.Rd man/temporalwhiten.Rd man/timeseriesimage2matrix.Rd man/visualizeBlob.Rd man/whiten.Rd

src/Atropos.cpp

src/CMakeLists.txt

src/ImageMath.cpp

src/Makevars

src/Makevars.win

src/ThresholdImage.cpp

src/TileImages.cpp

src/antsAffineInitializer.cpp

src/antsApplyTransforms.cpp

src/antsBinaryThresholdImageFilter.cpp

src/antsImage.cpp

src/antsImageClone.cpp

src/antsImageList.cpp

src/antsImageRead.cpp

src/antsImageWrite.cpp

src/antsMatrix.cpp

src/antsMotionCorr.cpp

src/antsPermuteAxesImageFilter.cpp

src/antsRegistration.cpp

src/antsThresholdImageFilter.cpp

src/antsr.h

src/itkImageR.cpp

src/sccan.cpp

stnava/itkImageR documentation built on May 30, 2019, 7:21 p.m.