Files in svenbioinf/OGRE

Calculate, visualize and analyse overlap between genomic regions

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

NEWS

OGRE/gvizPlots/A1.ID1.pdf OGRE/gvizPlots/A1.ID2.pdf OGRE/gvizPlots/ENSG00000142168.pdf OGRE/gvizPlots/ENSG00000155304.pdf OGRE/gvizPlots/ENSG00000160298.pdf OGRE/gvizPlots/ENSG00000160299.pdf OGRE/gvizPlots/ENSG00000160305.pdf OGRE/gvizPlots/ENSG00000160307.pdf OGRE/gvizPlots/ENSG00000160310.pdf OGRE/gvizPlots/ENSG00000166157.pdf OGRE/gvizPlots/ENSG00000180530.pdf OGRE/gvizPlots/ENSG00000185097.pdf OGRE/gvizPlots/ENSG00000185272.pdf OGRE/gvizPlots/ENSG00000186092.pdf OGRE/gvizPlots/ENSG00000187583.pdf OGRE/gvizPlots/ENSG00000187634.pdf OGRE/gvizPlots/ENSG00000187642.pdf OGRE/gvizPlots/ENSG00000188976.pdf OGRE/gvizPlots/ENSG00000235249.pdf OGRE/gvizPlots/ENSG00000237683.pdf OGRE/gvizPlots/ENSG00000268179.pdf OGRE/gvizPlots/ENSG00000269011.pdf OGRE/gvizPlots/ENSG00000269831.pdf

OGRE/output/Barplot_Summary.png

OGRE/output/Barplot_Summary_log.png

R/OGRE_GUI.R R/main.R R/methods.R README.md

inst/extdata/gffTest/query/Genes.gff3

inst/extdata/gffTest/subject/cpg.gff3

inst/extdata/logo.png

inst/extdata/overlap.png

inst/extdata/query/genes.RDS

inst/extdata/subject/CGI.RDS

inst/extdata/subject/TFBS.RDS

inst/scripts/notes_on_example_extData.R man/OGRE-package.Rd man/OGREDataSet.Rd man/OGREDataSetFromDir.Rd man/SHREC.Rd man/addDataSetFromHub.Rd man/addGRanges.Rd man/covPlot.Rd man/extendGRanges.Rd man/extractPromoters.Rd man/fOverlaps.Rd man/gvizPlot.Rd man/listPredefinedDataSets.Rd man/loadAnnotations.Rd man/makeExampleGRanges.Rd man/makeExampleOGREDataSet.Rd man/plotHist.Rd man/readDataSetFromFolder.Rd man/readQuery.Rd man/readSubject.Rd man/subsetGRanges.Rd man/sumPlot.Rd man/summarizeOverlap.Rd tests/testthat.R tests/testthat/test_OGREDataSet.R tests/testthat/test_OGREDataSetFromDir.R tests/testthat/test_addDataSetFromHub.R tests/testthat/test_addGRanges.R tests/testthat/test_fOverlaps.R tests/testthat/test_gvizPlot.R tests/testthat/test_listPredifinedDataSets.R tests/testthat/test_loadAnnotations.R tests/testthat/test_sumPlot.R vignettes/OGRE.Rmd

vignettes/logo.png

vignettes/overlap.png

svenbioinf/OGRE documentation built on Jan. 30, 2023, 10:55 p.m.