subsetGRanges: Subset a GRanges object

In svenbioinf/OGRE: Calculate, visualize and analyse overlap between genomic regions

Subset a GRanges object

Description

Subsets a GRanges object with reference to it's ID column using a ID vector.

Usage

subsetGRanges(OGREDataSet, IDs, name)

Arguments

OGREDataSet	An OGREDataSet
IDs	character vector with IDs used to subset the GRanges object defined in name
name	character Name of the GRanges object for subsetting. One of the GRanges objects in a OGREDataSet

Value

OGREDataSet.

Examples

myOGRE <- makeExampleOGREDataSet()
myOGRE <- loadAnnotations(myOGRE)
myOGRE <- subsetGRanges(myOGRE,c("ENSG00000142168","ENSG00000256715"),"genes")

svenbioinf/OGRE documentation built on Jan. 30, 2023, 10:55 p.m.