addGRanges: Add GenomicRanges

In svenbioinf/OGRE: Calculate, visualize and analyse overlap between genomic regions

Add GenomicRanges

Description

Add a GenomicRanges dataset to OGREDataSet

Usage

addGRanges(OGREDataSet, dataSet, type, label = NULL)

Arguments

OGREDataSet	An OGREDataSet
dataSet	A GRanges object. Each region needs chromosome, start, end and strand information. A unique ID and a name column must be present in the GenomicRanges object metadata. Avoid different chromosome naming conventions i.e. (chr1, CHR1, 1, I) among all datasets
type	Type of dataSet, must be either query or subject. If query the dataSet will be added as query and at the first position of OGREDataSet.
label	A character that will label your GRanges object. If not supplied, the label will be guessed from the dataset parameter.

Value

OGREDataSet.

Examples

myOGRE <- OGREDataSet()
myGRanges <- makeExampleGRanges()
myOGRE <- addGRanges(myOGRE,myGRanges,"query")

svenbioinf/OGRE documentation built on Jan. 30, 2023, 10:55 p.m.