extractPromoters: Extract promoter
In svenbioinf/OGRE: Calculate, visualize and analyse overlap between genomic regions
extractPromoters R Documentation
Extract promoter
Description
A wrapper of GenomicRanges::promoters() to extract promoter regions of
a GRanges object stored in a OGREDataSet
Usage
extractPromoters(OGREDataSet, name, upstream = 2000, downstream = 200)
Arguments
OGREDataSet
An OGREDataSet
name
character Name of the GRanges object
upstream
int (positive) upstream=2000(default)
downstream
int (positive) downstream=200(default)
Value
OGREDataSet
Examples
myOGRE <- makeExampleOGREDataSet()
myOGRE <- loadAnnotations(myOGRE)
myOGRE <- extractPromoters(myOGRE,"genes", upstream=2000, downstream=200)
svenbioinf/OGRE documentation built on Jan. 30, 2023, 10:55 p.m.
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| extractPromoters | R Documentation |
Extract promoter
Description
A wrapper of GenomicRanges::promoters() to extract promoter regions of
a GRanges object stored in a OGREDataSet
Usage
extractPromoters(OGREDataSet, name, upstream = 2000, downstream = 200)
Arguments
OGREDataSet |
An OGREDataSet |
name |
|
upstream |
|
downstream |
|
Value
OGREDataSet
Examples
myOGRE <- makeExampleOGREDataSet() myOGRE <- loadAnnotations(myOGRE) myOGRE <- extractPromoters(myOGRE,"genes", upstream=2000, downstream=200)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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