summarizeOverlap: Calculates min/max/average overlap
In svenbioinf/OGRE: Calculate, visualize and analyse overlap between genomic regions
summarizeOverlap R Documentation
Calculates min/max/average overlap
Description
Calculates min/max/average overlap for all datasets using summary().
Results can be accessed by metadata(OGREDataSet)$summaryDT which is a
list() of two data.table objects. The first one includes
elements without any overlap at all and the second provides summary numbers
for all elements that have at least one overlap.
Usage
summarizeOverlap(OGREDataSet)
Arguments
OGREDataSet
An OGREDataSet
Value
OGREDataSet.
Examples
myOGRE <- makeExampleOGREDataSet()
myOGRE <- loadAnnotations(myOGRE)
myOGRE <- fOverlaps(myOGRE)
myOGRE <- summarizeOverlap(myOGRE)
metadata(myOGRE)$summaryDT
svenbioinf/OGRE documentation built on Jan. 30, 2023, 10:55 p.m.
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| summarizeOverlap | R Documentation |
Calculates min/max/average overlap
Description
Calculates min/max/average overlap for all datasets using summary().
Results can be accessed by metadata(OGREDataSet)$summaryDT which is a
list() of two data.table objects. The first one includes
elements without any overlap at all and the second provides summary numbers
for all elements that have at least one overlap.
Usage
summarizeOverlap(OGREDataSet)
Arguments
OGREDataSet |
An OGREDataSet |
Value
OGREDataSet.
Examples
myOGRE <- makeExampleOGREDataSet() myOGRE <- loadAnnotations(myOGRE) myOGRE <- fOverlaps(myOGRE) myOGRE <- summarizeOverlap(myOGRE) metadata(myOGRE)$summaryDT
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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