Files in svilsen/STRMPS

Analysis of Short Tandem Repeat (STR) Massively Parallel Sequencing (MPS) Data

R/STR_Region_Identification.R R/all_in_one_workflow_fun.R R/allele_genotype_functions.R R/auxiliary_functions.R R/quality_functions.R R/stutter_functions.R inst/examples/blmm.R inst/examples/getGenotype.R inst/examples/getNoise.R inst/examples/identify.R inst/examples/mergeLists.R inst/examples/probabilityOfError.R inst/examples/qualityScores.R inst/examples/stringCoverageAggregated.R inst/examples/stutter.R inst/examples/workFlow.R man/BLMM.Rd man/STRMPSWorkflow.Rd man/STRMPSWorkflowBatch.Rd man/STRMPSWorkflowCollectStutters.Rd man/extractedReadsList-class.Rd man/extractedReadsListCombined-class.Rd man/extractedReadsListNonCombined-class.Rd man/extractedReadsListReverseComplement-class.Rd man/findNeighbours-stringCoverageGenotypeList-method.Rd man/findNeighbours.Rd man/findStutter-stringCoverageGenotypeList-method.Rd man/findStutter.Rd man/flankingRegions.Rd man/genotypeIdentifiedList-class.Rd man/genotypeList.Rd man/getGenotype-stringCoverageList-method.Rd man/getGenotype.Rd man/identifiedSTRs.Rd man/identifyNoise-stringCoverageList-method.Rd man/identifyNoise.Rd man/identifySTRRegions-ShortReadQ-method.Rd man/identifySTRRegions-character-method.Rd man/identifySTRRegions.Rd man/identifySTRRegions.control.Rd man/mergeGenotypeStringCoverage-genotypeIdentifiedList-method.Rd man/mergeGenotypeStringCoverage.Rd man/mergeNoiseStringCoverage-noiseIdentifiedList-method.Rd man/mergeNoiseStringCoverage.Rd man/neighbourList-class.Rd man/noiseIdentifiedList-class.Rd man/noiseList.Rd man/probabilityOfError.Rd man/qualityScore.Rd man/stringCoverage-extractedReadsList-method.Rd man/stringCoverage-extractedReadsListCombined-method.Rd man/stringCoverage-extractedReadsListNonCombined-method.Rd man/stringCoverage-extractedReadsListReverseComplement-method.Rd man/stringCoverage.Rd man/stringCoverage.control.Rd man/stringCoverageGenotypeList-class.Rd man/stringCoverageGenotypeList.Rd man/stringCoverageList-class.Rd man/stringCoverageList.Rd man/stringCoverageNoiseList-class.Rd man/workflow.control.Rd