Files in tagteam/riskRegression

Risk Regression Models and Prediction Scores for Survival Analysis with Competing Risks

R/0onload.R R/ARR.R R/AUC.binary.R R/AUC.competing.risks.R R/AUC.survival.R R/Brier.binary.R R/Brier.competing.risks.R R/Brier.survival.R R/CSC.R R/FGR.R R/GLMnet.R R/HAL9001.R R/IPA.R R/LRR.R R/RcppExports.R R/Score.R R/SuperPredictor.R R/Utils.R R/anova.ate.R R/as.data.table.ate.R R/as.data.table.influenceTest.R R/as.data.table.predictCSC.R R/as.data.table.predictCox.R R/ate-bootstrap.R R/ate-iid.R R/ate-pointEstimate.R R/ate.R R/autoplot.Score.R R/autoplot.ate.R R/autoplot.predictCSC.R R/autoplot.predictCox.R R/boxplot.Score.R R/calcSeCSC.R R/calcSeCox.R R/coef.CauseSpecificCox.R R/coef.ate.R R/coef.riskRegression.R R/compress.R R/computePerformance.R R/confint.R R/confint.ate.R R/confint.influenceTest.R R/confint.predictCSC.R R/confint.predictCox.R R/crossvalPerf.bootcv.R R/crossvalPerf.loob.AUC.R R/crossvalPerf.loob.Brier.R R/discreteRoot.R R/getCensoringWeights.R R/getComparisons.R R/getCoxInfo.R R/getInfluenceCurve.AUC.R R/getInfluenceCurve.AUC.censoring.term.R R/getInfluenceCurve.Brier.R R/getLegendData.R R/getNullModel.R R/getPerformanceData.R R/getResponse.R R/getSplitMethod.R R/getVcov.R R/iidCox.R R/influenceTest.R R/ipcw.R R/model.tables.ate.R R/nobs.R R/plot.riskRegression.R R/plotAUC.R R/plotBrier.R R/plotCalibration.R R/plotEffects.R R/plotPredictRisk.R R/plotROC.R R/plotRisk.R R/predict.CauseSpecificCox.R R/predict.FGR.R R/predict.riskRegression.R R/predictCox.R R/predictCoxPL.R R/predictCoxWeights.R R/predictRisk.R R/predictRisk.party.R R/print.CauseSpecificCox.R R/print.FGR.R R/print.IPA.R R/print.Score.R R/print.ate.R R/print.influenceTest.R R/print.predictCSC.R R/print.predictCox.R R/print.riskRegression.R R/print.subjectWeights.R R/riskLevelPlot.R R/riskQuantile.R R/riskRegression-package.R R/riskRegression.R R/sampleData.R R/saveCoxConfidential.R R/saveSynth.R R/selectCox.R R/sim.synth.R R/simActiveSurveillance.R R/simMelanoma.R R/simPBC.R R/subjectWeights.R R/summary.FGR.R R/summary.R R/summary.Score.R R/summary.ate.R R/summary.riskRegression.R R/synthesize.R R/tidy.ate.R R/transform.R R/vcov.ate.R R/wglm.R README.md bugs/test-failures.R examples/Illustration-AbsoluteRiskRegression-MelanomaData.R examples/lids-newsletter-riskRegression.R examples/score-ranger.R man/CSC.Rd man/Cforest.Rd man/Ctree.Rd man/FGR.Rd man/GLMnet.Rd man/Hal9001.Rd man/IPA.Rd man/Melanoma.Rd man/Paquid.Rd man/Score.Rd man/SmcFcs.Rd man/SuperPredictor.Rd man/SurvResponseVar.Rd man/anova.ate.Rd man/as.data.table.ate.Rd man/as.data.table.influenceTest.Rd man/as.data.table.predictCSC.Rd man/as.data.table.predictCox.Rd man/ate.Rd man/autoplot.Score.Rd man/autoplot.ate.Rd man/autoplot.predictCSC.Rd man/autoplot.predictCox.Rd man/baseHaz_cpp.Rd man/boot2pvalue.Rd man/boxplot.Score.Rd man/calcSeCSC.Rd man/calcSeCox.Rd man/coef.CauseSpecificCox.Rd man/coef.ate.Rd man/coef.riskRegression.Rd man/coef.wglm.Rd man/colCenter_cpp.Rd man/colCumSum.Rd man/colMultiply_cpp.Rd man/colScale_cpp.Rd man/confint.ate.Rd man/confint.influenceTest.Rd man/confint.predictCSC.Rd man/confint.predictCox.Rd man/coxBaseEstimator.Rd man/coxCenter.Rd man/coxFormula.Rd man/coxLP.Rd man/coxModelFrame.Rd man/coxN.Rd man/coxSpecial.Rd man/coxStrata.Rd man/coxStrataLevel.Rd man/coxVarCov.Rd man/coxVariableName.Rd man/dicreteRoot.Rd man/getSplitMethod.Rd man/iid.wglm.Rd man/iidCox.Rd man/influenceTest.Rd man/information.wglm.Rd man/ipcw.Rd man/is.iidCox.Rd man/model.matrix.cph.Rd man/model.matrix.phreg.Rd man/model.tables.ate.Rd man/penalizedS3.Rd man/plot.riskRegression.Rd man/plotAUC.Rd man/plotBrier.Rd man/plotCalibration.Rd man/plotEffects.Rd man/plotPredictRisk.Rd man/plotROC.Rd man/plotRisk.Rd man/predict.CauseSpecificCox.Rd man/predict.FGR.Rd man/predict.riskRegression.Rd man/predictCox.Rd man/predictCoxPL.Rd man/predictRisk.Rd man/print.CauseSpecificCox.Rd man/print.FGR.Rd man/print.IPA.Rd man/print.Score.Rd man/print.ate.Rd man/print.influenceTest.Rd man/print.predictCSC.Rd man/print.predictCox.Rd man/print.riskRegression.Rd man/print.subjectWeights.Rd man/reconstructData.Rd man/riskLevelPlot.Rd man/riskRegression-package.Rd man/riskRegression.Rd man/riskRegression.options.Rd man/rowCenter_cpp.Rd man/rowCumSum.Rd man/rowMultiply_cpp.Rd man/rowPaste.Rd man/rowScale_cpp.Rd man/rowSumsCrossprod.Rd man/sampleData.Rd man/saveCoxConfidential.Rd man/saveSynth.Rd man/score.wglm.Rd man/selectCox.Rd man/selectJump.Rd man/simActiveSurveillance.Rd man/simMelanoma.Rd man/simPBC.Rd man/simsynth.Rd man/splitStrataVar.Rd man/subjectWeights.Rd man/subsetIndex.Rd man/summary.FGR.Rd man/summary.Score.Rd man/summary.ate.Rd man/summary.riskRegression.Rd man/synthesize.Rd man/terms.phreg.Rd man/transformCIBP.Rd man/vcov.ate.Rd man/vcov.wglm.Rd man/weights.wglm.Rd man/wglm.Rd prepareData/Melanoma.R simulation/develop-synthesizer.R simulation/k-fold-CV.pdf simulation/simulationLTMLE.R simulation/synthesize.R simulation/synthesize.Rmd simulation/test-confidence-intervals.R slowtests/slowtest-score.R slowtests/test-SeSpPPVNPV-against-paul.R slowtests/test-ate.R slowtests/test-predictCSC.R slowtests/test-predictRisk.R slowtests/test-roc.R slowtests/test-score-bootstrap.R slowtests/test-score-crossval.R slowtests/test-score-hal9001.R slowtests/test-wglm.R tests/testthat.R tests/testthat/test-AUC.R tests/testthat/test-BinomialRegression.R tests/testthat/test-BrierScore.R tests/testthat/test-CauseSpecificCoxRegression.R tests/testthat/test-FineGrayRegression.R tests/testthat/test-boxplotScore.R tests/testthat/test-iidCox.R tests/testthat/test-phreg.R tests/testthat/test-plotRisk.R tests/testthat/test-predictCox.R tests/testthat/test-predictRisk-TD.R tests/testthat/test-predictRisk.R tests/testthat/test-score-train-test.R tests/testthat/test-score.R tests/testthat/test-summary-score.R vignettes/IFAUC.Rmd vignettes/IFAUC.pdf vignettes/IFBrier.Rmd vignettes/IFBrier.pdf vignettes/IFKMCens.Rmd vignettes/IFKMCens.pdf