Man pages for takahirosuzuki1980/InfiniumDiffMetMotR
Motif Overrepresentation analysis for Illumina Methylation Arrays
| countMatrix | PWM number comparison |
| DmpId | Identificaion of differentially methylated probes |
| enrichScore | Computation of a enrichment score |
| enrichScoreDist | Enrichment score |
| enrichTest | Significant Calling and summary output |
| EPICanno | Annotation of InfiniumMethylationEPIC beadsChip |
| epic.controls | EPIC control database |
| FCChangePlot | Plot a Fold-Change plot |
| getIdat2M | GetGEO idat file & M-value conversion |
| homer2PWMfile | Homer PWM to PWM for InfiniumDiffMetMotR |
| IMAGE_PWMlist | IMAGE PWM database |
| InfiniumDiffMetMotR | InfiniumDiffMetMotR. |
| lumiMethyNorm | Infinium Normalization & M-value computation |
| Methyl450anno | Annotation of InfiniumMethylation450 beadsChip |
| motHist | Draw a Histgram |
| motifClassCount | PWM Count |
| motifDistMultiSeqs | Parallel of motifDistFromCpG with a PWM |
| MotScr | PWM overrepresentation analysis pipline for illumina... |
| PoisTestPlot | Plot a p-value plot |
| probeID2position | conversion of probe ID to genomic corrdinate |
| reexports | Objects exported from other packages |
| selRawMetSamples | data selection for raw Infinium signal data |
| seqExtract | Sequence extraction |
| SigRange | Extraction of significantly enriched ranges |
| splitSeqMotDist | PWM serch for splitted sequence files |
| stratSampling | Stratified sampling |
| writeSplitSeq | Write sequences to multiple output files |
