countMatrix: PWM number comparison
In takahirosuzuki1980/InfiniumDiffMetMotR: Motif Overrepresentation analysis for Illumina Methylation Arrays
Description
Usage
Arguments
Value
Description
Count PWM in a window and compute fold-change(FC) and poisson p-value.
Usage
1
2
countMatrix(target_mot_posi, ctrl_mot_posi, seq_range, windowSize = 100,
slide = 50)
Arguments
target_mot_posi
PWM positions of target regions
ctrl_mot_posi
PWM positions of randomely selected regions
seq_range
range from probe position to be analyze
windowSize
window size
slide
length of window sliding
Value
a matrix containg number of PWM at demethylated regions, number of PWM at random regions, TF, and adjust p-value
takahirosuzuki1980/InfiniumDiffMetMotR documentation built on March 31, 2021, 8:41 a.m.
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Description Usage Arguments Value
Description
Count PWM in a window and compute fold-change(FC) and poisson p-value.
Usage
1 2 | countMatrix(target_mot_posi, ctrl_mot_posi, seq_range, windowSize = 100,
slide = 50)
|
Arguments
target_mot_posi |
PWM positions of target regions |
ctrl_mot_posi |
PWM positions of randomely selected regions |
seq_range |
range from probe position to be analyze |
windowSize |
window size |
slide |
length of window sliding |
Value
a matrix containg number of PWM at demethylated regions, number of PWM at random regions, TF, and adjust p-value
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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