SigRange: Extraction of significantly enriched ranges
In takahirosuzuki1980/InfiniumDiffMetMotR: Motif Overrepresentation analysis for Illumina Methylation Arrays
Description
Usage
Arguments
Value
Description
Extraction of significantly enriched ranges based on poisson test p-value. The positions where PWM is significantly enriched are marged as a region.
Usage
1
SigRange(motif_counts_matrix, cutoff = 1e-05, windowSize)
Arguments
motif_counts_matrix
motif counts matrix output from countMatrix
cutoff
cutoff p-value
windowSize
windowsize used for p-value coumutation (should be same as windowSize parameter of countMatrix)
Value
range of the regions where PWM is significantly enrihed.
takahirosuzuki1980/InfiniumDiffMetMotR documentation built on March 31, 2021, 8:41 a.m.
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Description Usage Arguments Value
Description
Extraction of significantly enriched ranges based on poisson test p-value. The positions where PWM is significantly enriched are marged as a region.
Usage
1 | SigRange(motif_counts_matrix, cutoff = 1e-05, windowSize)
|
Arguments
motif_counts_matrix |
motif counts matrix output from countMatrix |
cutoff |
cutoff p-value |
windowSize |
windowsize used for p-value coumutation (should be same as windowSize parameter of countMatrix) |
Value
range of the regions where PWM is significantly enrihed.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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