DmpId: Identificaion of differentially methylated probes
In takahirosuzuki1980/InfiniumDiffMetMotR: Motif Overrepresentation analysis for Illumina Methylation Arrays
Description
Usage
Arguments
Value
Description
Compare two data (or data sets) conpute differentially methylated probes.
For single data comparison, delta-M value is used.
For data set comparison, both Welch's t-test and delta-M value are used.
Usage
1
2
DmpId(selDataMatrix, ControlColnum, TreatmentColnum, p.cutoff = 0.05,
cutoff = 2, MethylDemethyl = "Demethyl")
Arguments
selDataMatrix
normalized M-value matrix
ControlColnum
column number for Control sample(s)
TreatmentColnum
column number for target sample(s)
p.cutoff
cut-off for Welch's t-test
cutoff
cut-off for delta-M value
MethylDemethyl
direction of Ddifferentially methylated regions (methylated or demethylated)
Value
IDs of differentially methylated probes
takahirosuzuki1980/InfiniumDiffMetMotR documentation built on March 31, 2021, 8:41 a.m.
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Description Usage Arguments Value
Description
Compare two data (or data sets) conpute differentially methylated probes. For single data comparison, delta-M value is used. For data set comparison, both Welch's t-test and delta-M value are used.
Usage
1 2 | DmpId(selDataMatrix, ControlColnum, TreatmentColnum, p.cutoff = 0.05,
cutoff = 2, MethylDemethyl = "Demethyl")
|
Arguments
selDataMatrix |
normalized M-value matrix |
ControlColnum |
column number for Control sample(s) |
TreatmentColnum |
column number for target sample(s) |
p.cutoff |
cut-off for Welch's t-test |
cutoff |
cut-off for delta-M value |
MethylDemethyl |
direction of Ddifferentially methylated regions (methylated or demethylated) |
Value
IDs of differentially methylated probes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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