enrichTest: Significant Calling and summary output
In takahirosuzuki1980/InfiniumDiffMetMotR: Motif Overrepresentation analysis for Illumina Methylation Arrays
Description
Usage
Arguments
Value
Description
Judge whether PWM is significantly overrepresented at the DMP regions.
The Judgement is made by Poisson p-value at DMP position and enrichment score at DMP position which is more than Q3+IQR*3 of enrichment score of analyzed range.
Usage
1
2
enrichTest(significant_ranges, motif_counts_matrix, seq_range,
enrichment_scores, windowSize)
Arguments
significant_ranges
generated by SigRange
motif_counts_matrix
generated by countMatrix
seq_range
Analyzed range from DMP
enrichment_scores
enrichScoreDist
windowSize
windowsize used for p-value coumutation etc... (should be same as windowSize parameter of countMatrix)
Value
summary of analysis and signicifant call
takahirosuzuki1980/InfiniumDiffMetMotR documentation built on March 31, 2021, 8:41 a.m.
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Description Usage Arguments Value
Description
Judge whether PWM is significantly overrepresented at the DMP regions. The Judgement is made by Poisson p-value at DMP position and enrichment score at DMP position which is more than Q3+IQR*3 of enrichment score of analyzed range.
Usage
1 2 | enrichTest(significant_ranges, motif_counts_matrix, seq_range,
enrichment_scores, windowSize)
|
Arguments
significant_ranges |
generated by SigRange |
motif_counts_matrix |
generated by countMatrix |
seq_range |
Analyzed range from DMP |
enrichment_scores |
enrichScoreDist |
windowSize |
windowsize used for p-value coumutation etc... (should be same as windowSize parameter of countMatrix) |
Value
summary of analysis and signicifant call
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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