lumiMethyNorm: Infinium Normalization & M-value computation
In takahirosuzuki1980/InfiniumDiffMetMotR: Motif Overrepresentation analysis for Illumina Methylation Arrays
Description
Usage
Arguments
Value
View source: R/lumiMethyNorm.R
Description
Normalize the Infinium signal intensitty data and compute M-value.
Input data should be unnormalized data containing;
TargetID: Illumina ID
Sample1.Signal_A: Signal of Unmethylated probe of sample 1
Sample1.Signal_B: Signal of Methylated probe of sample 1
Sample1.Detection Pval: detection P value of sample 1
(sample_names: vector of sample names)
Usage
1
2
lumiMethyNorm(fileName = "TableControl.txt", idatpath = getwd(),
inputtype, sample_names = FALSE)
Arguments
fileName
unnourmalized intensity data
idatpath
directroy of idata files
inputtype
type of input. "signal": a row signal txt file generated by genomeStudio or "idat": idat files
sample_names
a vetor of sample names
Value
a object of normalized M-value
takahirosuzuki1980/InfiniumDiffMetMotR documentation built on March 31, 2021, 8:41 a.m.
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Description Usage Arguments Value
View source: R/lumiMethyNorm.R
Description
Normalize the Infinium signal intensitty data and compute M-value. Input data should be unnormalized data containing; TargetID: Illumina ID Sample1.Signal_A: Signal of Unmethylated probe of sample 1 Sample1.Signal_B: Signal of Methylated probe of sample 1 Sample1.Detection Pval: detection P value of sample 1 (sample_names: vector of sample names)
Usage
1 2 | lumiMethyNorm(fileName = "TableControl.txt", idatpath = getwd(),
inputtype, sample_names = FALSE)
|
Arguments
fileName |
unnourmalized intensity data |
idatpath |
directroy of idata files |
inputtype |
type of input. "signal": a row signal txt file generated by genomeStudio or "idat": idat files |
sample_names |
a vetor of sample names |
Value
a object of normalized M-value
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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