gpatterns.apply_tidy_cpgs: Apply a function on tidy cpgs (internally separated by...

In tanaylab/gpatterns: Single Molecule Methylation Patterns Analysis Suite

Apply a function on tidy cpgs (internally separated by coordinates)

Description

Apply a function on tidy cpgs (internally separated by coordinates)

Usage

gpatterns.apply_tidy_cpgs(
  track,
  f,
  split_by_bin = TRUE,
  parallel = getOption("gpatterns.parallel"),
  use_sge = FALSE,
  max_jobs = 300,
  verbose = FALSE,
  ...
)

Arguments

track	name of track
f	function to apply (needs to return a data frame)
split_by_bin	apply on each genomic bin separately
parallel	execute parallely
use_sge	use sge cluster for parallelization
max_jobs	maximal number of jobs for sge
verbose	print jobs status
...	additonal parameters for gcluster.run2

Value

a data frame with f applied to every genomic bin of tidy_cpgs of track

tanaylab/gpatterns documentation built on May 15, 2023, 6:23 p.m.