gpatterns.get_pat_cov: Calculate pattern coverage for each CpG
In tanaylab/gpatterns: Single Molecule Methylation Patterns Analysis Suite
gpatterns.get_pat_cov R Documentation
Calculate pattern coverage for each CpG
Description
Calculate pattern coverage for each CpG
Usage
gpatterns.get_pat_cov(
track,
pat_len,
max_span = 500,
by_coord_bin = TRUE,
parallel = getOption("gpatterns.parallel")
)
Arguments
track
name of track
pat_len
pattern length
max_span
maximum span to look for CpGs
by_coord_bin
execute separatly for each coordinates bin
(for tracks that do not fit into memory)
parallel
execute parallely
tanaylab/gpatterns documentation built on May 15, 2023, 6:23 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| gpatterns.get_pat_cov | R Documentation |
Calculate pattern coverage for each CpG
Description
Calculate pattern coverage for each CpG
Usage
gpatterns.get_pat_cov(
track,
pat_len,
max_span = 500,
by_coord_bin = TRUE,
parallel = getOption("gpatterns.parallel")
)
Arguments
track |
name of track |
pat_len |
pattern length |
max_span |
maximum span to look for CpGs |
by_coord_bin |
execute separatly for each coordinates bin (for tracks that do not fit into memory) |
parallel |
execute parallely |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.