gpatterns.get_pipeline_stats: Calculate QC statistics for track

In tanaylab/gpatterns: Single Molecule Methylation Patterns Analysis Suite

Calculate QC statistics for track

Description

Calculate QC statistics for track

Usage

gpatterns.get_pipeline_stats(
  track,
  tidy_cpgs_stats_dir = NULL,
  uniq_tidy_cpgs_stats_dir = NULL,
  add_mapping_stats = FALSE,
  add_insert_length_stats = TRUE
)

Arguments

track	track name (or mutiple track names)
tidy_cpgs_stats_dir	directory with tidy_cpgs stats files (cannot be used with multiple tracks)
uniq_tidy_cpgs_stats_dir	directory with filter_dups stats files (cannot be used with multiple tracks)
add_mapping_stats	add full mapping statistics (singles, discordant etc.)
add_insert_length_stats	add average insert length

Value

data frame with 'track' field with the track name pipeline statistics

tanaylab/gpatterns documentation built on May 15, 2023, 6:23 p.m.