gpatterns.epipoly_plot: Plots epipolymorphism

In tanaylab/gpatterns: Single Molecule Methylation Patterns Analysis Suite

Plots epipolymorphism

Description

Plots epipolymorphism

Usage

gpatterns.epipoly_plot(
  tracks,
  intervals,
  colnames = NULL,
  pat_len = 5,
  median_line_binsize = 6,
  meth_binsize = 0.01,
  fig_ofn = NULL,
  width = NULL,
  height = NULL,
  ncolumns = 3,
  separate_figs = FALSE
)

Arguments

tracks	track names
intervals	genomic scope for which the function is applied
colnames	column names for the samples (useful when track names are too long
pat_len	pattern length
median_line_binsize	number of bins to smooth in median line
meth_binsize	size of bin for methyltion in x axis
fig_ofn	figure file name. if NULL plotting would occur on the current device
width	figure width in inches
height	figure width in inches
ncolumns	number of columns
separate_figs	plot each track in a separate figure

Value

plot. If seperate.figs=TRUE list of plots

tanaylab/gpatterns documentation built on May 15, 2023, 6:23 p.m.