gpatterns.filter_by_dist: Filter intervals set by distance from another intervals set
In tanaylab/gpatterns: Single Molecule Methylation Patterns Analysis Suite

gpatterns.filter_by_dist

R Documentation

Filter intervals set by distance from another intervals set

Description

Filter intervals set by distance from another intervals set

Usage

gpatterns.filter_by_dist(
  intervals,
  annot_intervs = NULL,
  annot_intervs_dist = 0,
  orientation = "upstream",
  use_tss = FALSE,
  tss_max_dist = 1000
)

Arguments

`intervals`	intervals to filter
`annot_intervs`	annotation intervals to filter by
`annot_intervs_dist`	maximal distance from annot_intervs
`orientation`	orientation (upstream, downstream or both)
`use_tss`	use TSS as annot intervs
`tss_dist`	annot_intervs_dist for TSS