API for tanaylab/shaman
shaman - Sampling HiC contAct Matrices for Aparametric Normalization
| Global functions | |
|---|---|
| .onAttach | Source code |
| .onLoad | Source code |
| .shaman_check_config | Source code |
| .shaman_dump_config | Man page Source code |
| .shaman_get_annotation | Source code |
| .shaman_get_data | Source code |
| .shaman_get_ucsc | Source code |
| .shaman_load_config | Man page Source code |
| .shaman_norm_contact_grid_by_shuffled_filter | Source code |
| .shaman_palette_breaks | Source code |
| .shaman_split_and_merge_matrix | Source code |
| ctcf_forward | Man page |
| ctcf_reverse | Man page |
| get_param | Man page Source code |
| get_param_list | Man page Source code |
| init_params | Man page Source code |
| shaman | Man page |
| shaman_generate_feature_grid | Man page Source code |
| shaman_get_test_track_db | Man page Source code |
| shaman_gplot_map | Man page Source code |
| shaman_gplot_map_score | Man page Source code |
| shaman_hic_matrix_shuffler_cpp | Source code |
| shaman_kk_norm | Man page |
| shaman_plot_feature_grid | Man page Source code |
| shaman_plot_map_score_with_annotations | Man page Source code |
| shaman_plot_tracks_and_annotations | Man page Source code |
| shaman_score_hic_mat | Man page |
| shaman_score_hic_mat_for_track | Man page |
| shaman_score_hic_points | Man page |
| shaman_score_hic_track | Man page |
| shaman_score_pal | Man page Source code |
| shaman_shuffle_and_score_hic_mat | Man page |
| shaman_shuffle_hic_mat_for_track | Man page |
| shaman_shuffle_hic_track | Man page Source code |
