candidate_ffls_mirna_all_part1: candidate_ffls_mirna_all_part1

In th789/fflmediation: Predict Feed Forward Loops Using Mediation Analysis

candidate_ffls_mirna_all_part1

Description

First half of all possible candidate miRNA FFLs assembled from databases

Usage

candidate_ffls_mirna_all_part1

Format

A DataFrame (12,000,000 x 9) with the following columns:

mirna

miRNA in candidate FFL [Accession Number]

tf

TF in candidate FFL [Ensembl ID]

targetgene

target gene in candidate FFL [Ensembl ID]

TARGETSCAN

indicator of whether miRNA-target gene or miRNA-TF interaction is in TargetScan v7.2 database

MIRTARBASE

indicator of whether miRNA-target gene or miRNA-TF interaction is in miRTarBase v7.0 database

MIRDB

indicator of whether miRNA-target gene or miRNA-TF interaction is in miRDB v6.0 database

MIRANDA

indicator of whether miRNA-target gene or miRNA-TF interaction is in miRanda v3.0 database

TRRUST

indicator of whether TF-target gene or miRNA-TF interaction is in TRRUST v2.0 database

ENCODE

indicator of whether TF-target gene or miRNA-TF interaction is in ENCODE database

th789/fflmediation documentation built on June 13, 2022, 1:02 p.m.