sample_output_onegroup_mirna_ffls: sample_output_onegroup_mirna_ffls

In th789/fflmediation: Predict Feed Forward Loops Using Mediation Analysis

sample_output_onegroup_mirna_ffls

Description

Sample output of predict_ffls_one_group

Usage

sample_output_onegroup_mirna_ffls

Format

A DataFrame (3 x 49) representing expression data of 5 mRNAs for 50 samples

mirna_name

miRNA in candidate FFL [miRNA name]

tf_name

TF in candidate FFL [SYMBOL]

targetgene_name

target gene in candidate FFL [SYMBOL]

pFFL

pFFL of candidate FFL

p_value_adj

adjusted p-value of candidate FFL

p_value

unadjusted p-value of candidate FFL

mirna

miRNA in candidate FFL [Accession Number]

tf

TF in candidate FFL [Ensembl ID]

targetgene

target gene in candidate FFL [Ensembl ID]

TARGETSCAN

indicator of whether miRNA-target gene or miRNA-TF interaction is in TargetScan v7.2 database

MIRTARBASE

indicator of whether miRNA-target gene or miRNA-TF interaction is in miRTarBase v7.0 database

MIRDB

indicator of whether miRNA-target gene or miRNA-TF interaction is in miRDB v6.0 database

MIRANDA

indicator of whether miRNA-target gene or miRNA-TF interaction is in miRanda v3.0 database

TRRUST

indicator of whether TF-target gene or miRNA-TF interaction is in TRRUST v2.0 database

ENCODE

indicator of whether TF-target gene or miRNA-TF interaction is in ENCODE database

remaining columns

estimate, standard error (se), t-statistic (t), and p-value of regression coefficients

th789/fflmediation documentation built on June 13, 2022, 1:02 p.m.