tf_targetgene_db: Transcription Factor (TF)-Target Gene Interactions
In th789/fflmediation: Predict Feed Forward Loops Using Mediation Analysis
tf_targetgene_db R Documentation
Transcription Factor (TF)-Target Gene Interactions
Description
A DataFrame of TF-target gene interactions
compiled from databases (ENCODE and TRRUST v2.0).
Usage
tf_targetgene_db
Format
A DataFrame (1624664 x 4) with the following columns:
- tf
TF involved in the interaction [Ensembl ID]
- targetgene
target gene involved in the interaction (gene targeted by TF), target genes include transcription factors [Ensembl ID]
- TRRUST
indicator of whether interaction is in TRRUST v2.0 database
- ENCODE
indicator of whether interaction is in ENCODE database
th789/fflmediation documentation built on June 13, 2022, 1:02 p.m.
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| tf_targetgene_db | R Documentation |
Transcription Factor (TF)-Target Gene Interactions
Description
A DataFrame of TF-target gene interactions compiled from databases (ENCODE and TRRUST v2.0).
Usage
tf_targetgene_db
Format
A DataFrame (1624664 x 4) with the following columns:
- tf
TF involved in the interaction [Ensembl ID]
- targetgene
target gene involved in the interaction (gene targeted by TF), target genes include transcription factors [Ensembl ID]
- TRRUST
indicator of whether interaction is in TRRUST v2.0 database
- ENCODE
indicator of whether interaction is in ENCODE database
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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