mirna_targetgene_db: miRNA-Target Gene Interactions

In th789/fflmediation: Predict Feed Forward Loops Using Mediation Analysis

miRNA-Target Gene Interactions

Description

A DataFrame of miRNA-target gene interactions compiled from databases (TargetScan v7.2, miRTarBase v7.0, miRDB v6.0, and miRanda v3.0).

Usage

mirna_targetgene_db

Format

A DataFrame (2477728 x 6) with the following columns:

mirna

miRNA involved in the interaction [Accession Number]

targetgene

target gene involved in the interaction (gene targeted by miRNA), target genes include transcription factors [Ensembl ID]

TARGETSCAN

indicator of whether interaction is in TargetScan v7.2 database

MIRTARBASE

indicator of whether interaction is in miRTarBase v7.0 database

MIRDB

indicator of whether interaction is in miRDB v6.0 database

MIRANDA

indicator of whether interaction is in miRanda v3.0 database

th789/fflmediation documentation built on June 13, 2022, 1:02 p.m.