candidate_ffls_tf_all: candidate_ffls_tf_all

In th789/fflmediation: Predict Feed Forward Loops Using Mediation Analysis

candidate_ffls_tf_all

Description

All possible candidate TF FFLs assembled from databases

Usage

candidate_ffls_tf_all

Format

A DataFrame (178,872 x 10) with the following columns:

tf

TF in candidate FFL [Ensembl ID]

mirna

miRNA in candidate FFL [Accession Number]

targetgene

target gene in candidate FFL [Ensembl ID]

TRANSMIR

indicator of whether miRNA-TF interaction is in TransmiR v2.0 database

TARGETSCAN

indicator of whether miRNA-target gene or miRNA-TF interaction is in TargetScan v7.2 database

MIRTARBASE

indicator of whether miRNA-target gene or miRNA-TF interaction is in miRTarBase v7.0 database

MIRDB

indicator of whether miRNA-target gene or miRNA-TF interaction is in miRDB v6.0 database

MIRANDA

indicator of whether miRNA-target gene or miRNA-TF interaction is in miRanda v3.0 database

TRRUST

indicator of whether TF-target gene or miRNA-TF interaction is in TRRUST v2.0 database

ENCODE

indicator of whether TF-target gene or miRNA-TF interaction is in ENCODE database

th789/fflmediation documentation built on June 13, 2022, 1:02 p.m.