check_linked_transmissions: Check whether a pair of individuals are linked by two or more...
In thednainus/HIVepisimAnalysis: Functions to analyse results from network analysis
View source: R/summary_utils.R
check_linked_transmissions R Documentation
Check whether a pair of individuals are linked by two or more individuals.
Description
This function will check whether a pair of individuals (host.1 and host.2)
are linked because intermediary individuals were involved. For example, host.3
infected host.1 and host.2.
Usage
check_linked_transmissions(df1, tm)
Arguments
df1
Dataframe containing information of summarized results obtained
with phyloscanner after running the function summarize_trans.
tm
Dataframe of transmission matrix containing information of who
transmitted to whom and at what time transmission happened.
Value
Dataframe with a new column "trans" with only the pair of individuals
that are linked.
The value for column "trans" will be "linked" or "not linked".
thednainus/HIVepisimAnalysis documentation built on Sept. 21, 2023, 7:32 a.m.
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View source: R/summary_utils.R
| check_linked_transmissions | R Documentation |
Check whether a pair of individuals are linked by two or more individuals.
Description
This function will check whether a pair of individuals (host.1 and host.2) are linked because intermediary individuals were involved. For example, host.3 infected host.1 and host.2.
Usage
check_linked_transmissions(df1, tm)
Arguments
df1 |
Dataframe containing information of summarized results obtained with phyloscanner after running the function summarize_trans. |
tm |
Dataframe of transmission matrix containing information of who transmitted to whom and at what time transmission happened. |
Value
Dataframe with a new column "trans" with only the pair of individuals that are linked. The value for column "trans" will be "linked" or "not linked".
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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