get_newTip_names: Get tip names based on duplicated rows.
In thednainus/HIVepisimAnalysis: Functions to analyse results from network analysis
get_newTip_names R Documentation
Get tip names based on duplicated rows.
Description
This is a support function for the main function
toPhylo_transmatOrigin.
Usage
get_newTip_names(dup_tip, el_ori)
Arguments
dup_tip
Vector of duplicated tips
el_ori
Matrix of edge list and information on origin or migration
Value
A vector of the duplicated vertex in the form of ID_origin or ID_migrant.
Based on the time of duplicated rows at seroconversion
(see time_atSeroconversion),
it will return the tip name that should be in the phylogenetic tree.
I used the origin or migrant information observed at the time of
seroconversion.
thednainus/HIVepisimAnalysis documentation built on Sept. 21, 2023, 7:32 a.m.
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| get_newTip_names | R Documentation |
Get tip names based on duplicated rows.
Description
This is a support function for the main function
toPhylo_transmatOrigin.
Usage
get_newTip_names(dup_tip, el_ori)
Arguments
dup_tip |
Vector of duplicated tips |
el_ori |
Matrix of edge list and information on origin or migration |
Value
A vector of the duplicated vertex in the form of ID_origin or ID_migrant.
Based on the time of duplicated rows at seroconversion
(see time_atSeroconversion),
it will return the tip name that should be in the phylogenetic tree.
I used the origin or migrant information observed at the time of
seroconversion.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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