create_sample_csv: Get sample csv file

In thednainus/HIVepisimAnalysis: Functions to analyse results from network analysis

Get sample csv file

Description

In this function the sample file for VirusTreeSimulator program will contain all individuals in the transmision matrix

Usage

create_sample_csv(tm, time_seq, seq_count, prefix = NULL)

Arguments

tm	Transmission matrix as returned using the function get_transmat
time_seq	Vector for sample time. If one value is provided, it will be replicated to the size of samples in the transmission matrix (tm).
seq_count	The number of sequences per sample in the transmission matrix. If one value is provided, it will be replicated to the size of samples in the transmission matrix (tm).
prefix	Text for prefix to use when saving filename.

Details

If a prefix is not provided, csv file will be saved as sample.csv

Value

Write data to csv file.

Examples

To Do

thednainus/HIVepisimAnalysis documentation built on Sept. 21, 2023, 7:32 a.m.