check_true_transmissions: Check whether a pair of individuals represent a true...
In thednainus/HIVepisimAnalysis: Functions to analyse results from network analysis
View source: R/summary_utils.R
check_true_transmissions R Documentation
Check whether a pair of individuals represent a true transmission.
Description
This function will check whether a pair of individuals (host.1 and host.2)
represent a true transmission from host.1 to host.2 independent of phyloscanner
results.
Usage
check_true_transmissions(df1, tm)
Arguments
df1
Dataframe containing information of summarized results obtained
with phyloscanner after running the function summarize_trans.
tm
Dataframe containing information of the transmission matrix.
Value
Dataframe with a new column "trans" with only the individuals that
represent a true transmission with correct direction of transmission.
The value for column "trans" will be "true" (for true transmission).
thednainus/HIVepisimAnalysis documentation built on Sept. 21, 2023, 7:32 a.m.
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View source: R/summary_utils.R
| check_true_transmissions | R Documentation |
Check whether a pair of individuals represent a true transmission.
Description
This function will check whether a pair of individuals (host.1 and host.2) represent a true transmission from host.1 to host.2 independent of phyloscanner results.
Usage
check_true_transmissions(df1, tm)
Arguments
df1 |
Dataframe containing information of summarized results obtained with phyloscanner after running the function summarize_trans. |
tm |
Dataframe containing information of the transmission matrix. |
Value
Dataframe with a new column "trans" with only the individuals that represent a true transmission with correct direction of transmission. The value for column "trans" will be "true" (for true transmission).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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