Man pages for thierrygosselin/assigner
Assignment Analysis with RADseq Data
| assign_defaults | assign_defaults |
| assigner_dots | assigner_dots |
| assigner_fst_stats | assigner_fst_stats |
| assigner_function_header | assigner_function_header |
| assigner_future | assigner parallel function |
| assigner_stats | assigner_stats |
| assigner_tic | assigner_tic |
| assigner_toc | assigner_toc |
| assignment_adegenet | assignment with adegenet |
| assignment_gsi_sim | assignment with gsi_sim |
| assignment_marker_loop | assignment_marker_loop |
| assignment_ngs | Assignment analysis tailored for RADseq data |
| assignment_random | assignment_random |
| assignment_ranking | assignment_ranking |
| assignment_subsamples | assignment_subsamples |
| boot_ci | boot_ci |
| boot_ci_nei | boot_ci_nei |
| change_matrix_strata | change_matrix_strata |
| check_args_class | check_args_class |
| clean_marker_number | clean_marker_number |
| compound_assignment_pipe_operator | compound assignment pipe operator |
| compute_fst | compute_fst |
| compute_fst_nei | compute_fst_nei |
| data_assigner_sim_01 | Simulated dataset to test assigner |
| data_assigner_sim_02 | Simulated dataset to test assigner |
| dlr | Genotype likelihood ratio distance (Dlr) |
| dlr_relative | dlr_relative |
| Exposition_pipe_operator | Exposition pipe-operator |
| extract_dots | extract_dots |
| fst_NEI87 | A fast implementation of Nei's 1987 Fst (overall and paiwise... |
| fst_nei_subsample | fst_nei_subsample |
| fst_stats | fst_stats |
| fst_subsample | fst_subsample |
| fst_WC84 | A fast implementation of Weir and Cockerham (1984) Fst/Theta... |
| fst_write | fst_write |
| generate_holdhout | generate_holdhout |
| generate_subsamples | generate_subsamples |
| gsi_sim_binary | file path to be used in a call to gsi_sim. |
| gsi_sim_binary_path | return the path where gsi_sim should be in the R system paths |
| gsi_sim_exists | return TRUE if gsi_sim exists where it should be |
| gsi_sim_is_executable | return TRUE if gsi_sim is executable |
| heatmap_fst | heatmap_fst |
| import_subsamples | Import individual's assignment results of different subsample... |
| import_subsamples_fst | Import the fst ranking from all the subsample runs inside an... |
| install_gsi_sim | downloads gsi_sim that is appropriate for the operating... |
| marker_selection | marker_selection |
| match_markers_meta | match_markers_meta |
| message_func_call | message_func_call |
| n | The number of observations in the current group. |
| pairwise_fst | pairwise_fst |
| pairwise_fst_nei | pairwise_fst_nei |
| parallel_core_opt | parallel_core_opt |
| pipe | Forward-pipe operator |
| plot_assignment | plot_assignment |
| plot_dlr | Assignment plot of genotype likelihood (Dlr). |
| rad_long | rad_long |
| rad_wide | rad_wide |
| subsampling_data | subsampling data |
