join_strata: Join the strata with the data

In thierrygosselin/radiator: RADseq Data Exploration, Manipulation and Visualization using R

Join the strata with the data

Description

The function first filters individuals in data then include the strata.

Usage

join_strata(data, strata = NULL, pop.id = FALSE, verbose = TRUE)

Arguments

data	A tidy dataset object. Documented in tidy_genomic_data.
strata	(path or object) The strata file or object. Additional documentation is available in read_strata. Use that function to whitelist/blacklist populations/individuals. Option to set pop.levels/pop.labels is also available.
pop.id	(logical) When pop.id = TRUE, the strata returns the stratification colname POP_ID. Default: pop.id = FALSE, returns STRATA.
verbose	(optional, logical) When verbose = TRUE the function is a little more chatty during execution. Default: verbose = TRUE.

Value

The data filtered by the strata by individuals.

Author(s)

Thierry Gosselin [e-mail]

See Also

read_strata, summary_strata, individuals2strata, change_pop_names, generate_strata

Examples

## Not run: 
data <- radiator::join_strata(
    data = my_tidy_dataset_object,
    strata = my_strata_object)

## End(Not run)

thierrygosselin/radiator documentation built on Nov. 7, 2024, 1:30 p.m.