plot_boxplot_diversity: Box plot of the diversity (Gene and Haplotypes)

In thierrygosselin/radiator: RADseq Data Exploration, Manipulation and Visualization using R

Box plot of the diversity (Gene and Haplotypes)

Description

GGPLOT2 Box plot of the diversity (Gene and Haplotypes).

GGPLOT2 radiator helper plot used in MAC, MAF and MAD filter. Lines and points, to help decide filter threshold.

Usage

plot_boxplot_diversity(data, aes.x.y, y.title)

radiator_helper_plot(
  data,
  strata = FALSE,
  stats,
  x.axis.title = NULL,
  x.breaks = NULL,
  text.orientation = "horizontal",
  plot.filename = NULL
)

Arguments

data	containing the stats
aes.x.y	The GGPLOT2 aesthetics, e.g. aes.x.y = aes(x = factor(POP_ID), y = GENE_DIVERSITY, na.rm = T).
y.title	Title of the y-axis.
strata	Containing strata info for the visual. Default: strata = FALSE.
stats	e.g. MAC, MAF or MAD.
x.axis.title	Title for the x axis
text.orientation	Orientation of the x axis text. Default: text.orientation = "horizontal"horizontal.
plot.filename	To save the figure provide a filename. Default: plot.filename = NULL

thierrygosselin/radiator documentation built on May 5, 2024, 5:12 a.m.