plot_density_distribution_maf: Figure density distribution of minor allele frequency (MAF)...

In thierrygosselin/radiator: RADseq Data Exploration, Manipulation and Visualization using R

Figure density distribution of minor allele frequency (MAF) summary statistics.

Description

Create density distribution of MAF summary statistics.

Usage

plot_density_distribution_maf(
  data,
  maf.group,
  aes.colour = ggplot2::aes(y = ..scaled.., color = POP_ID),
  adjust.bin = 1,
  x.title
)

Arguments

data	sumstats or tidy vcf summarised files.
maf.group	The GGPLOT2 aes (e.g. aes(x = FREQ_ALT, na.rm = F)).
aes.colour	GGPLOT2 aesthetics colour, e.g. aes(y = ..scaled.., color = POP_ID) or aes(y = ..count.., color = POP_ID)
adjust.bin	Adjust GGPLOT2 bin size (0 to 1).
x.title	Title of the x-axis. e.g. "MAF distribution"

Details

turn off the legend using fig + theme(legend.position = "none") or zoom in a section with 'fig + coord_cartesian(xlim = c(0, 0.1), ylim = c(0, 1))'. Save the figure with : ggsave("figure name.pdf", width = 40, height = 20, dpi = 600, units = "cm", useDingbats = F).

Author(s)

Thierry Gosselin [e-mail]

See Also

tidy_genomic_data

thierrygosselin/radiator documentation built on Nov. 7, 2024, 1:30 p.m.