summary_rad: Summary statistics for RADseq data

In thierrygosselin/radiator: RADseq Data Exploration, Manipulation and Visualization using R

Summary statistics for RADseq data

Description

Summarise the tidy or gds data. The summary statistics is by default calculated by strata and markers. Frequency of the REF/ALT alleles, the observed and the expected heterozygosity and the inbreeding coefficient (FIS).

Usage

summary_rad(data, path.folder = NULL, digits = 4, verbose = TRUE)

Arguments

data	(4 options) A file or object generated by radiator: tidy data Genomic Data Structure (GDS) How to get GDS and tidy data ? Look into tidy_genomic_data, read_vcf or tidy_vcf.
path.folder	(path, optional) By default will print results in the working directory. Default: path.folder = NULL.
digits	(integer, optional). Default: digits = 4.
verbose	(optional, logical) When verbose = TRUE the function is a little more chatty during execution. Default: verbose = TRUE.

thierrygosselin/radiator documentation built on Nov. 7, 2024, 1:30 p.m.