write_genepopedit: Write a genepopedit flatten object

In thierrygosselin/radiator: RADseq Data Exploration, Manipulation and Visualization using R

Write a genepopedit flatten object

Description

Write a genepopedit object from a tidy data frame or GDS file/object.

Why not use genepopedit::genepop_flatten?

• genepopedit requires a specific type of genepop, so if you don't want to manipulate your genepop file, radiator is an alternative.

• radiator follows guidelines highlighted here: genepop format, but the 3 functions in radiator that reads genepop files:

  1. genomic_converter

  2. tidy_genomic_data

  3. the underlying module: tidy_genepop

  imports a larger variety of genepop alternatives, similarly to adegenet read.genepop function, only faster.

Usage

write_genepopedit(data)

Arguments

data	(4 options) A file or object generated by radiator: tidy data Genomic Data Structure (GDS) How to get GDS and tidy data ? Look into tidy_genomic_data, read_vcf or tidy_vcf.

Value

A genepopedit object in the global environment.

Author(s)

Thierry Gosselin [e-mail]

References

Stanley RRE, Jeffery NW, Wringe BF, DiBacco C, Bradbury IR (2017) genepopedit: a simple and flexible tool for manipulating multilocus molecular data in R. Molecular Ecology Resources, 17, 12-18.

See Also

genepopedit

thierrygosselin/radiator documentation built on Nov. 7, 2024, 1:30 p.m.