write_genind: Write a genind object from a tidy data frame or GDS file or...

In thierrygosselin/radiator: RADseq Data Exploration, Manipulation and Visualization using R

Write a genind object from a tidy data frame or GDS file or object.

Description

Write a genind object from a tidy data frame. Used internally in radiator and assigner and might be of interest for users.

Usage

write_genind(data, write = FALSE, verbose = FALSE)

Arguments

data	(4 options) A file or object generated by radiator: tidy data Genomic Data Structure (GDS) How to get GDS and tidy data ? Look into tidy_genomic_data, read_vcf or tidy_vcf.
write	(logical, optional) To write in the working directory the genind object. The file is written with [e-mail] and can be open with load or readRDS. Default: write = FALSE.
verbose	(optional, logical) When verbose = TRUE the function is a little more chatty during execution. Default: verbose = TRUE.

Author(s)

Thierry Gosselin [e-mail]

References

Jombart T (2008) adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics, 24, 1403-1405.

Jombart T, Ahmed I (2011) adegenet 1.3-1: new tools for the analysis of genome-wide SNP data. Bioinformatics, 27, 3070-3071.

thierrygosselin/radiator documentation built on Nov. 7, 2024, 1:30 p.m.