write_gtypes: Write a strataG object from radiator GDS and tidy data file...

In thierrygosselin/radiator: RADseq Data Exploration, Manipulation and Visualization using R

Write a strataG object from radiator GDS and tidy data file or object.

Description

Write a strataG object from a tidy data frame. Used internally in radiator and might be of interest for users.

Usage

write_gtypes(data, write = FALSE, filename = NULL)

Arguments

data	(4 options) A file or object generated by radiator: tidy data Genomic Data Structure (GDS) How to get GDS and tidy data ? Look into tidy_genomic_data, read_vcf or tidy_vcf.
write	(logical, optional) To write in the working directory the gtypes object. The file is written with [e-mail] if no filename is provided and can be open with load or readRDS. Default: write = FALSE.
filename	(character, optional) Filename prefix. Default: filename = NULL.

Value

An object of the class strataG is returned.

Author(s)

Thierry Gosselin [e-mail]

References

Archer FI, Adams PE, Schneiders BB. strataG: An r package for manipulating, summarizing and analysing population genetic data. Molecular Ecology Resources. 2017; 17: 5-11. doi:10.1111/1755-0998.12559

See Also

strataG

Examples

## Not run: 
# require(strataG)
# with radiator GDS
turtle <- radiator::write_gtypes(data = "my.radiator.gds.rad")

# with tidy data
turtle <- radiator::write_gtypes(data = "my.radiator.rad")

## End(Not run)

thierrygosselin/radiator documentation built on Nov. 7, 2024, 1:30 p.m.