write_plink: Write a plink tped/tfam file from a tidy data frame
In thierrygosselin/radiator: RADseq Data Exploration, Manipulation and Visualization using R
write_plink R Documentation
Write a plink tped/tfam file from a tidy data frame
Description
Write a plink file from a tidy data frame.
Used internally in radiator
and assigner
and might be of interest for users.
Usage
write_plink(data, filename = NULL)
Arguments
data
A tidy data frame object in the global environment or
a tidy data frame in wide or long format in the working directory.
How to get a tidy data frame ?
Look into radiator tidy_genomic_data.
filename
(optional) The file name prefix for tped/tfam files
written to the working directory. With default: filename = NULL,
the date and time is appended to radiator_plink_.
Author(s)
Thierry Gosselin thierrygosselin@icloud.com
References
Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR,
Bender D, et al.
PLINK: a tool set for whole-genome association and population-based linkage
analyses.
American Journal of Human Genetics. 2007: 81: 559–575. doi:10.1086/519795
thierrygosselin/radiator documentation built on Nov. 7, 2024, 1:30 p.m.
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| write_plink | R Documentation |
Write a plink tped/tfam file from a tidy data frame
Description
Write a plink file from a tidy data frame. Used internally in radiator and assigner and might be of interest for users.
Usage
write_plink(data, filename = NULL)
Arguments
data |
A tidy data frame object in the global environment or
a tidy data frame in wide or long format in the working directory.
How to get a tidy data frame ?
Look into radiator |
filename |
(optional) The file name prefix for tped/tfam files
written to the working directory. With default: |
Author(s)
Thierry Gosselin thierrygosselin@icloud.com
References
Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, Bender D, et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. American Journal of Human Genetics. 2007: 81: 559–575. doi:10.1086/519795
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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